Basic Information

Insect: Nudaria mundana
Gene Symbol: -
Assembly: GCA_963556515.1
Location: OY748309.1:7139987-7151770[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.012 1.6 10.6 0.5 1 23 13 36 13 36 0.96

2 25 0.0075 0.97 11.3 1.3 2 23 40 62 40 62 0.95

3 25 0.00063 0.081 14.7 4.4 2 23 70 92 69 92 0.96

4 25 0.0033 0.42 12.4 0.4 2 23 99 120 98 120 0.94

5 25 1.7e-06 0.00021 22.8 0.6 1 23 126 148 126 148 0.99

6 25 2e-05 0.0025 19.4 0.5 1 23 154 176 154 176 0.98

7 25 0.00014 0.018 16.7 4.3 1 23 236 259 236 259 0.97

8 25 0.022 2.9 9.8 1.3 3 23 285 306 283 306 0.92

9 25 0.96 1.2e+02 4.7 2.1 2 23 329 351 328 351 0.90

10 25 0.0066 0.85 11.5 0.0 1 23 357 380 357 380 0.92

11 25 0.0052 0.67 11.8 0.8 2 23 386 408 385 408 0.95

12 25 0.0085 1.1 11.1 0.5 2 23 414 436 413 436 0.92

13 25 0.00023 0.03 16.0 1.5 1 23 443 466 443 466 0.96

14 25 0.00061 0.079 14.7 0.9 2 23 473 494 472 494 0.94

15 25 0.00044 0.057 15.2 1.9 1 23 500 522 500 522 0.99

16 25 8.2e-06 0.0011 20.6 1.2 1 23 528 550 528 551 0.96

17 25 0.0088 1.1 11.1 0.5 2 23 644 666 643 666 0.91

18 25 0.25 32 6.5 4.4 2 23 689 711 688 711 0.92

19 25 0.0022 0.29 12.9 0.0 1 23 717 740 717 740 0.94

20 25 0.0091 1.2 11.0 1.7 2 19 746 763 746 768 0.89

21 25 0.004 0.52 12.1 0.9 2 23 774 796 773 796 0.92

22 25 0.0024 0.31 12.8 1.0 3 23 805 826 803 826 0.96

23 25 0.00039 0.05 15.3 0.3 2 23 833 854 832 854 0.93

24 25 3.7e-05 0.0047 18.6 3.5 1 23 860 882 860 882 0.98

25 25 1.4e-06 0.00018 23.0 2.0 1 23 888 910 888 911 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.012	1.6	10.6	0.5	1	23	13	36	13	36	0.96
2	25	0.0075	0.97	11.3	1.3	2	23	40	62	40	62	0.95
3	25	0.00063	0.081	14.7	4.4	2	23	70	92	69	92	0.96
4	25	0.0033	0.42	12.4	0.4	2	23	99	120	98	120	0.94
5	25	1.7e-06	0.00021	22.8	0.6	1	23	126	148	126	148	0.99
6	25	2e-05	0.0025	19.4	0.5	1	23	154	176	154	176	0.98
7	25	0.00014	0.018	16.7	4.3	1	23	236	259	236	259	0.97
8	25	0.022	2.9	9.8	1.3	3	23	285	306	283	306	0.92
9	25	0.96	1.2e+02	4.7	2.1	2	23	329	351	328	351	0.90
10	25	0.0066	0.85	11.5	0.0	1	23	357	380	357	380	0.92
11	25	0.0052	0.67	11.8	0.8	2	23	386	408	385	408	0.95
12	25	0.0085	1.1	11.1	0.5	2	23	414	436	413	436	0.92
13	25	0.00023	0.03	16.0	1.5	1	23	443	466	443	466	0.96
14	25	0.00061	0.079	14.7	0.9	2	23	473	494	472	494	0.94
15	25	0.00044	0.057	15.2	1.9	1	23	500	522	500	522	0.99
16	25	8.2e-06	0.0011	20.6	1.2	1	23	528	550	528	551	0.96
17	25	0.0088	1.1	11.1	0.5	2	23	644	666	643	666	0.91
18	25	0.25	32	6.5	4.4	2	23	689	711	688	711	0.92
19	25	0.0022	0.29	12.9	0.0	1	23	717	740	717	740	0.94
20	25	0.0091	1.2	11.0	1.7	2	19	746	763	746	768	0.89
21	25	0.004	0.52	12.1	0.9	2	23	774	796	773	796	0.92
22	25	0.0024	0.31	12.8	1.0	3	23	805	826	803	826	0.96
23	25	0.00039	0.05	15.3	0.3	2	23	833	854	832	854	0.93
24	25	3.7e-05	0.0047	18.6	3.5	1	23	860	882	860	882	0.98
25	25	1.4e-06	0.00018	23.0	2.0	1	23	888	910	888	911	0.96

Sequence Information

Coding Sequence: ATGGACAGTCATGCTCATGATAAAGGAAAGCGTGACTTCTATTGCAAGATCTGCGGTCGGAAATACATCTCCGACGCTGCTCGAGGTAACCACATGAAGCGGTCGCATGGAGATAACTCATGTCACATTTGTGACTTAGTTCTTAAAAGCAACTACCAAAAACAAAATCACATGGCCAAAGTACACGATTATTATCTTACAGATTTGAAATGCGAGCATTGTCCAAAAAAGTTTGTATTCCATAAGTTACTCATACGACATGTGAAGAAAGATCATTTAAAAGAGAGAAGCAAAGTTTGTGACGTGTGTGGGGATAAATTTTTTGACCCAGATTCATTAAAAAGGCATAAAGTCAAACATAGCGATTTAAAACCTTATGAATGCGATGTTTGTAAGAAGAAATTTCCTAGACCTAATGCTTATAGACGACATTTAAGGGTACATACAAAGGAACGTACTTATATTTGTACAGAATGTGGTAAAGCATACATTCATAACAGCGGCCTGGCATATCATAGGTTAACTCACAAGAAGAATAAAGATGGAGAACATACTAATTTAAAACGAGAAGCTACCGTCACCAGGAAGAATTTTTTTGATGAAGAAAAGTATGCCGTTGTGCAGCGGAGACACGATCTGAAGAATCTGATCACCATCGTGTTGGAGCTCTCTAATATAATGCCGTTCCGATTTGCAGCTAATAAATACAAGTGTTTCTATTGTGACTGCACTTTTACCGAGAGCACAAACCTCAAAGAACACACTCGGGAAGAACACCAAGACGCTAATCTAAGAAAAGCTCTAGATTCTCAAGACAGCAGTCGTGTAAAGTTGGATATTTCCGAAATCATCTGCATGAAATGTCCAAAATACTTCAAAAACTTCTATTTATTCCTCAACCACATTCATGAAATACACAACCTGAAATTCAGGAAAGAAATTGCAAGTAGTATCTTCACATGCATCTTGTCAGATGACGGAATGTCTTGTCTAGAATGTAAAGCGGAGTTCAGATTCTTTGGATCTCTATTGAAACACACCTACCACAATCATAACAAGTATAAAGGATTCCTTTGCGAAATATGTGGCCAAGGGTTCGCATCGAAAGAGGGTGTGGCAAACCACGTCCAAAATATCCATAAAGATAAAAGCAAGCGGTGTGTTCAATGTAGTAAAGTATTAAAGAATCGTTACGCGTTACAAGTGCATCGTGAAAAAGAACATAAAATTGAAACCCTCAAATGTACAAAGTGTCCAGAAGTTTTCAAATCTACATACTTGAAGCAACAACATTTAGCGTTAGTTCATGATGTAACGGAACTTCAATTTCGTTGCGATGAATGTGATCGTATGTTCATAAAGAAAAATACACTGGTACAACATAAATTACGAACGCatttgaaacaaaaaaatattaagtgtgATATTTGTGGTTTCAAAGTATTCAGTAAAACTCTTTTGAAGAAGCATATGGTTCGACACGATGATTCTAGACCGTTCCAATGTAAGATTTGTATGAAAAGTTTTCAGAGGGAGAAGACTTTGGAAATGCATACAAGGATACATACTAATGATAAGAGATATGAGTGTAAAGAGTGCGGCAAGGCATATGTCCAAACGGCCAGTTATAAGCTTCATATGAAGGTACATCATAGCGATTATCAAAATTTTTGGGATGACGAAAAGTATGCCGAAAAGCAGCGAAAAGACGATCTGACGAAGATAATCACCATCGTCTTGGAGAACTCCAATATAATGCCGTTCCGATGGGCAGCCAATAAATACATGTGTTTCTTTTGTTGCTGCACTTTTGTCGAGAGTACACAGCTTAAAGAACACACTTTAGAAGAACACAAAGACGCTAAACTAAGAAGGGTTCTAAGGTCTTTACTCGGCAGTAGTCGTATAAAGTTGGACATTTCAGAAATGATGTGCAAAAGATGTCCGAAACGCTTCGAAAACTTTGACTTATTTCTCAATCACATTTATGAAATACACGAACTGAAATTCAACAAGGAAATTGCAAGTAGTATCTTCACATTCAGCTTGTCAGATGACGGAATGTCTTGTCGAGAATGTGGACAGGGGTTCAGATTTTTTGgaactttattaaaacataccCATCACTttcataacaaatataaaacattCCTTTGCGAAATATGTGGCCAAGGGTTTATAGCGAAAGGGAATGtcgaaaaccacatcaaaaatgTTCATAATGTTAAAGGCAACCGATGTGTTAAATGTAGTAAAGTATTTAGGAATCTTTACGCGTTACAAGTGCATTGTGAAAAGGCACATAAAATTGAAACGCTCAAATGTTCGAAGTGTTCAGAAGTTTTCACGTCTAAATACCTAAAACGACAACATTTAGCGTTAGTTCATGACGTGAAGAAACTGCAATTCGGTTGCGATGAATGTGATCGTATGTTCACAATGAAAAGTAGACTGGTACAGCATAAATTGCGCACACatttgaaacaaaaaaatattacgtgTGAAATTTGTGGTTTTAAAGTGTTCAGTAATGATCTTTTGAAGAGGCATATGGTTCGACACGATGATTCTAGACCCTTCCAATGTGAGTTTTGTAAGAAGAGTTTTCAGAGAAAGAAGACTTTGGAAATACATAAAAGAATACACACTAATGATAGGAGATATGAGTGTAAAGAATGCGGCAAGGCGTTTGTCCAAACCACCAGTTATAAGCTGCATATGAGGGTACATCATAGTGGTAATGAGGGATCTTCCTGGCACTAA
Protein Sequence: MDSHAHDKGKRDFYCKICGRKYISDAARGNHMKRSHGDNSCHICDLVLKSNYQKQNHMAKVHDYYLTDLKCEHCPKKFVFHKLLIRHVKKDHLKERSKVCDVCGDKFFDPDSLKRHKVKHSDLKPYECDVCKKKFPRPNAYRRHLRVHTKERTYICTECGKAYIHNSGLAYHRLTHKKNKDGEHTNLKREATVTRKNFFDEEKYAVVQRRHDLKNLITIVLELSNIMPFRFAANKYKCFYCDCTFTESTNLKEHTREEHQDANLRKALDSQDSSRVKLDISEIICMKCPKYFKNFYLFLNHIHEIHNLKFRKEIASSIFTCILSDDGMSCLECKAEFRFFGSLLKHTYHNHNKYKGFLCEICGQGFASKEGVANHVQNIHKDKSKRCVQCSKVLKNRYALQVHREKEHKIETLKCTKCPEVFKSTYLKQQHLALVHDVTELQFRCDECDRMFIKKNTLVQHKLRTHLKQKNIKCDICGFKVFSKTLLKKHMVRHDDSRPFQCKICMKSFQREKTLEMHTRIHTNDKRYECKECGKAYVQTASYKLHMKVHHSDYQNFWDDEKYAEKQRKDDLTKIITIVLENSNIMPFRWAANKYMCFFCCCTFVESTQLKEHTLEEHKDAKLRRVLRSLLGSSRIKLDISEMMCKRCPKRFENFDLFLNHIYEIHELKFNKEIASSIFTFSLSDDGMSCRECGQGFRFFGTLLKHTHHFHNKYKTFLCEICGQGFIAKGNVENHIKNVHNVKGNRCVKCSKVFRNLYALQVHCEKAHKIETLKCSKCSEVFTSKYLKRQHLALVHDVKKLQFGCDECDRMFTMKSRLVQHKLRTHLKQKNITCEICGFKVFSNDLLKRHMVRHDDSRPFQCEFCKKSFQRKKTLEIHKRIHTNDRRYECKECGKAFVQTTSYKLHMRVHHSGNEGSSWH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -