Basic Information

Insect: Nudaria mundana
Gene Symbol: -
Assembly: GCA_963556515.1
Location: OY748294.1:7858842-7876042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.9e-05 0.01 17.5 1.5 1 23 423 445 423 445 0.96

2 20 0.0038 0.49 12.2 0.6 1 20 451 470 451 473 0.94

3 20 1e-05 0.0013 20.3 5.8 1 23 492 514 492 514 0.98

4 20 8.9e-05 0.011 17.3 4.1 1 23 520 542 520 542 0.99

5 20 3.4e-05 0.0044 18.7 5.3 1 23 548 570 548 570 0.97

6 20 1e-05 0.0013 20.3 7.3 1 23 576 598 576 598 0.97

7 20 6.5e-07 8.4e-05 24.1 2.9 1 23 604 626 604 626 0.97

8 20 9.3e-05 0.012 17.3 6.7 1 23 632 654 632 654 0.97

9 20 0.00013 0.016 16.9 6.7 1 23 660 682 660 682 0.97

10 20 4.5e-07 5.7e-05 24.6 1.9 1 23 688 710 688 710 0.98

11 20 8.8e-06 0.0011 20.5 7.7 1 23 716 738 716 738 0.98

12 20 3.7e-05 0.0048 18.5 6.8 1 23 744 766 744 766 0.98

13 20 1.8e-06 0.00023 22.7 4.2 1 23 772 794 772 794 0.98

14 20 7.1e-06 0.00092 20.8 5.2 1 23 800 822 800 822 0.96

15 20 7.4e-06 0.00095 20.8 4.2 1 23 828 850 828 850 0.98

16 20 2.8e-06 0.00036 22.1 6.0 1 23 856 878 856 878 0.98

17 20 1.5e-05 0.002 19.8 8.0 1 23 884 906 884 906 0.97

18 20 2.5e-05 0.0033 19.1 6.4 1 23 912 934 912 934 0.98

19 20 0.0011 0.14 13.9 0.9 1 23 941 963 941 963 0.96

20 20 3.7 4.7e+02 2.8 0.6 1 10 972 981 972 982 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.9e-05	0.01	17.5	1.5	1	23	423	445	423	445	0.96
2	20	0.0038	0.49	12.2	0.6	1	20	451	470	451	473	0.94
3	20	1e-05	0.0013	20.3	5.8	1	23	492	514	492	514	0.98
4	20	8.9e-05	0.011	17.3	4.1	1	23	520	542	520	542	0.99
5	20	3.4e-05	0.0044	18.7	5.3	1	23	548	570	548	570	0.97
6	20	1e-05	0.0013	20.3	7.3	1	23	576	598	576	598	0.97
7	20	6.5e-07	8.4e-05	24.1	2.9	1	23	604	626	604	626	0.97
8	20	9.3e-05	0.012	17.3	6.7	1	23	632	654	632	654	0.97
9	20	0.00013	0.016	16.9	6.7	1	23	660	682	660	682	0.97
10	20	4.5e-07	5.7e-05	24.6	1.9	1	23	688	710	688	710	0.98
11	20	8.8e-06	0.0011	20.5	7.7	1	23	716	738	716	738	0.98
12	20	3.7e-05	0.0048	18.5	6.8	1	23	744	766	744	766	0.98
13	20	1.8e-06	0.00023	22.7	4.2	1	23	772	794	772	794	0.98
14	20	7.1e-06	0.00092	20.8	5.2	1	23	800	822	800	822	0.96
15	20	7.4e-06	0.00095	20.8	4.2	1	23	828	850	828	850	0.98
16	20	2.8e-06	0.00036	22.1	6.0	1	23	856	878	856	878	0.98
17	20	1.5e-05	0.002	19.8	8.0	1	23	884	906	884	906	0.97
18	20	2.5e-05	0.0033	19.1	6.4	1	23	912	934	912	934	0.98
19	20	0.0011	0.14	13.9	0.9	1	23	941	963	941	963	0.96
20	20	3.7	4.7e+02	2.8	0.6	1	10	972	981	972	982	0.94

Sequence Information

Coding Sequence: ATGAATCAAGAACACCATAGTATGAACACGGGTGGTGGCCAGCCACCGGGGACTTCTGAGGCTCAGAACCAAAGAGTACAGTCCGCTCAGCAACAGCAACAAAATAACTTGCCTGCCACGACATCTGCTACTGATTTACGAGTGAACTCTGTGAACTCTGCTGTTAACGTCGCTTTGTCTAGTGTTGCTAAATATTGGGTGTTTACAAATTTATTTCCCGGACCTATACCCCAAGTGTCTGTGTATGGCTTACCTGCTGGAGCCAGAATAGAAAATGGAAAGCCTGTGCAGGATCTTGGTCAAGTTCTTAATGGGGATCCAAATATTATACTTGGCCATCATGCTGGACAATCTCAAGTTACAGTATCAGCTGCAGGTGGCCAGCAGATACCAGTATCCCAACTCATCACACAGTCCGGCCAAACACATGAAGCCCTTGTGGCCCACAGTCAGCAAGCAGAACTGACAGTGGCTCAAGCACAGGTGTCCAACAATGGCCAGGTGTCAGTTAACACAGGCCAGCCCACCCATCAGCAGGTACCCACTAATCGGGTCGAATTTGTACAACACCATAACATTGATATGGTAAATTACGTGGGACACCATTCACAACAGCATCTGTTACAACAACAGCTTATGGGGCGGCCTGAGCATAGCAACCAACAGATACAGTTGACTGTAAGTGAAGATGGGATTGTTACTGTGGTGGAGCCTGCGGGAAGTAAGCTGGTCGACAAAGAAGAATTACATGAAGCTATTAAAATGCCCACGGAGCATGCCCTCACGGTACATCAGTTGCAGCAGATTGTTGGCCAACagGTGATAGACAGCGTGGTTCGCATAGAACAAGCTACTGGCGAGCCGGCCAACATTCTCGTGACACACAACCCTGACGGCACCACGTCTATAGAAGCCAGTGCTAATGAAACACTCATAGTCAAGGATGAGAAAAACAATGCTGAAATGGAAACTGCACAGTTTGCAATACCAGCTGAAATTAAGGATATCAAAGGGTTAGATTTAAAGAATGTTGGTACAATAGGAATGGACGGCGCAGTAGTCAAGATATCGGCCGGCGCTTCAGAGCACGACCTCCACGCTATGTATAAAGTCAATGTAGAAGATCTGTCGCAGCTGTTAGCTTACCACGAAGTGTTTGGAAAATTAAATACAGAAGGACAACCACAGGCCAAGGTTATAAGTGAAGTGGAAGTAGAGGCAGGTACAAGTGCACCGATGTCTGAAGCAGACACGTCTCCCGGTCACCACGCGTGTGATATTTGTGGCAAAATATTCCAATTCCGATACCAACTCATTGTTCACAGACGTTACCACGGTGAAAGCAAGCCGTTCACATGTCAAGTTTGTGGTTCCGCCTTCGCAAATCCCGTCGAACTATCCAGACACGGGAAATGTCATCTTGCGGGTGACCCTAACGAAAGGCACGCTAAGAGAATGGCTCAGGATAAACCATATGTCTGCACGACTTGCCATAAAACATTCTCACGTAAGGAACACTTGGATAATCACGTTAGAAGTCATACTGGCGAGACACCGTACAGATGCGAGTTCTGCGCAAAAACGTTCACCCGCAAGGAGCACATGGTAAACCACGTCCGTAAGCACACGGGAGAGACGCCTCACCGATGCGACATTTGTAAGAAGAGCTTCACTAGAAAAGAGCACTTCATGAACCACGTTATGTGGCATACAgGTGAAACGCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGAAAGGAGCATTTAGTGAATCATATGAGGTCTCACACAAACGATACTCCGTTCCGATGTGAACTGTGTGGCAAATCATTTACGAGAAAGGAACACTTCACCAATCACATATTGTGGCATACGGGTGAAACCCCTCACCGTTGTGATTTCTGCTCGAAGACATTCACTCGTAAAGAGCATCTACTAAACCACGTACGTCAACACACCGGCGAGTCACCACACAGATGTACTTTCTGCAGCAAATCGTTCACGCGACGCGAACATCTTGTGAATCACGTTAGACAACACACTGGAGAAACACCCTTCCAGTGTGGATACTGCCCTAAAGCCTTCACCAGGAAGGACCATCTAGTAAACCACGTACGCCAGCATACAGGTGAATCCCCACACAAATGTTCGTACTGTACAAAGTCGTTTACTCGCAAGGAGCATCTAACGAATCACGTGCGACAACACACCGGGGAATCCCCACATCGATGCACATTCTGTGCCAAATCCTTCACTAGAAAAGAACACCTTACCAATCATATCAGACAGCACACGGGGGAAACGCCACACAAGTGTACGTACTGTCCGCGCGCGTTCGCTCGCAAGGAACATCTCAACAACCACATCCGACAGCACACGGGCGTCACGCCGCACGCCTGCACCTACTGCAACAAGAGCTTCACCAGGAAGGAGCACCTTGTCAACCATGTGCGGCAACACACAGGAGAAACTCCATTCAAGTGCACGTTCTGCGCTAAATCCTTCTCTCGCAAGGAACACTTGACGAATCACATAAACCTACATACAGGGGAGACGCCGCACAAGTGTCCCTTCTGTACTAAGACGTTCTCGAGAAAAGAACACTTAACTAATCATGTCAGAATTCACACGGGCGAGTCCCCCCACCGCTGCGAGTTCTGCCAGAAGACGTTCACCCGCAAGGAGCACCTGACGAACCACATGAAGCAGCACACGGGCGACACGGCGCACACCTGCAAAGTTTGCGCCAAACACTTCACTAGGAAAGAGCATCTCGTCGCTCATATGAGGTCGCACAGTTGCAGTGAGAGACCACACACATGTGGCGAGTGCGGTAAATCATTCCCTCTAAAAGGCAACCTTTTATTCCACGAACGTTCACACAACAAAGCAAATGCTACCAAGCAGTTCCGATGTGAAGTTTGCTCCAAGGAATTTATGTGTAAAGAACAGGGCATCTag
Protein Sequence: MNQEHHSMNTGGGQPPGTSEAQNQRVQSAQQQQQNNLPATTSATDLRVNSVNSAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQVLNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQLITQSGQTHEALVAHSQQAELTVAQAQVSNNGQVSVNTGQPTHQQVPTNRVEFVQHHNIDMVNYVGHHSQQHLLQQQLMGRPEHSNQQIQLTVSEDGIVTVVEPAGSKLVDKEELHEAIKMPTEHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASANETLIVKDEKNNAEMETAQFAIPAEIKDIKGLDLKNVGTIGMDGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQPQAKVISEVEVEAGTSAPMSEADTSPGHHACDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYVCTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACTYCNKSFTRKEHLVNHVRQHTGETPFKCTFCAKSFSRKEHLTNHINLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDTAHTCKVCAKHFTRKEHLVAHMRSHSCSERPHTCGECGKSFPLKGNLLFHERSHNKANATKQFRCEVCSKEFMCKEQGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707182;
90% Identity: iTF_01166931;
80% Identity: -