Nmun019751.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748298.1:13502329-13508167[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-07 5.7e-05 24.0 0.0 1 39 18 57 18 62 0.90 2 2 8.6 3.9e+03 -1.1 0.1 14 23 142 150 136 152 0.72
Sequence Information
- Coding Sequence
- ATGCCGCGGAAATGTATCAGGAAAATAGGGGCACCCGTTCGTGCTGCTTGGTCTGAAGAAGCCCTTCGTAAAGCTTTCGAGGAAATGAATAAAGGTCAAGTCGGCGTGAATGAAATATCTCGTCGCTATGGTATTCCATCTCGAACTTTAAGGAGGCGACATGCTAAAAAAAACTGTGAAAAACTTACTTTGGgaaaACATCCCACTCTGGACTTTGAAAACGAGAAACGTCTCGTAGCGCACATACAAAAATTAGAAAAGGCAGGATTTCCCACAACACGACAGGATGTAAGAAGACTCGCTTTTGAATTTGCCGAGAAACTGggtttggaaaatccttttaaCAAAGAGACACGCATGGCTGGTCAGCATTGGCTCAAATCATTTCTTGAACGACACCCGGAACTCAGTATTCGCCAGGCAGAAGGTTTGTCTATCGCAAGGGCACAAGGATTAAATCGAGATGAAGTAAACAAAATGTTTGAGTTGTTGCTAAATGTACTGACTGAAAATGATTTGATCGATAAACCAGATCGAATTTATAATATTGACGAGACTGGAGTCCAATTGAACAATAATCCTGGTAAAGTAATTGCTACTAAAGGTGTCAAAGTAGTAAATTCCATCACTTCTAGCGAAAAAGGTGAGACTATGTCAATTATTGCTTGCTGTAACGCTGTAGGCAACTATGTTCCTCCGGtggtcattatcaagggggtcaATAAAAGACCAGAGTTCCAAGAGGGTCTTCCGCCCGGAGCCAACGTTTACATGAACAAAAAATCTGCCTACGTCAACTCAGAACTCTTTGAAAAGTGGCTGAAAGAACAGTTCGTGCCAATAAAACCACAAGGTAAGGTTTTGCTTATACTTGACGGGCATTCGTCTCACACTACTGCTATTGATTTACTAGAATTAGCACAAGAAAATGACATCATATTGTTCTGTTTGCCAAGCCACACTACACAGGCTTTACAACCACTTGACCGGAGTTTTTTTAAACCGTTCAAAACTTATTTCGCTGCAGAAACTAAAAACTGGATGGTGAGTCACAAAGATCGAAAAATAAATCGATACGTTGCTGGAAAATTAATAGGTAACGCATGGGCTCGCGCTGCTACCTCTTCTAATGCTGTGAATGGGTTTCGTGCATGTGGTATTTTCCCGTACAATCCTTCTGCTATTCCTGACAGCTACTTTGCTATCTCTGATAACAGCTTTCAAAACCTAGATGAAGGAAACCTTGTTCAAGACCAACCAGTAGCAAGAGAACCCGACGCTAATGCTGATAATTATAATGTTGACAATGTAGAAGTCATAACTCCGAGTAAATTTCTTAACGAATGTTCACCGGTCCCGAAAATTCCTGTTCCATTATACAAAAGAGGCAAGCAAGGTGCTGCCGTTTTAAATTCAGAAGAACATATAAACGCTAAGAAAGCTAAGCTGAAAGGTAAAGCTAAGAAGCAAATACCAGACAAACCTAAAAAAACTAACCAAGAATCAGTTCCTAAAAAGAAAAGACCGAGGATTAGCTCTGAAAGTGAACTAGAGTCCGACGAATCAGATTCTAACCAGACTGATAAAGAAAATACTGAATGCAGAGAATGTTTGGATGTCTATGCAAGTACCAAGTCCACAGCGGACTGGATTAAGTGCGTAATGTGTAAACTCTGGCTACACGAAGATTGCACTCTATATggcgattactgtaataaatgtgGACACAAGAAGAAGCTTGCAGCTAAAAAAGCTAACCTGGCCAAAGTAAATTCGAAGCATAAGTAA
- Protein Sequence
- MPRKCIRKIGAPVRAAWSEEALRKAFEEMNKGQVGVNEISRRYGIPSRTLRRRHAKKNCEKLTLGKHPTLDFENEKRLVAHIQKLEKAGFPTTRQDVRRLAFEFAEKLGLENPFNKETRMAGQHWLKSFLERHPELSIRQAEGLSIARAQGLNRDEVNKMFELLLNVLTENDLIDKPDRIYNIDETGVQLNNNPGKVIATKGVKVVNSITSSEKGETMSIIACCNAVGNYVPPVVIIKGVNKRPEFQEGLPPGANVYMNKKSAYVNSELFEKWLKEQFVPIKPQGKVLLILDGHSSHTTAIDLLELAQENDIILFCLPSHTTQALQPLDRSFFKPFKTYFAAETKNWMVSHKDRKINRYVAGKLIGNAWARAATSSNAVNGFRACGIFPYNPSAIPDSYFAISDNSFQNLDEGNLVQDQPVAREPDANADNYNVDNVEVITPSKFLNECSPVPKIPVPLYKRGKQGAAVLNSEEHINAKKAKLKGKAKKQIPDKPKKTNQESVPKKKRPRISSESELESDESDSNQTDKENTECRECLDVYASTKSTADWIKCVMCKLWLHEDCTLYGDYCNKCGHKKKLAAKKANLAKVNSKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636325;
- 90% Identity
- -
- 80% Identity
- -