Nmun004168.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748287.1:18504262-18506530[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0001 0.046 14.7 0.1 4 39 18 53 15 58 0.82 2 2 0.00013 0.059 14.4 0.0 4 38 63 97 60 100 0.83
Sequence Information
- Coding Sequence
- atGCCACGTAAAAGGAATCGAACAACCACAAAAGCTTCTTGGACGGTGGATTCATTAGAAAATGCGGTATCTATTCTCAAAAGAGGAAGCATTTCGGTGTACAAAGTATCTCAGCAAACTGGCATTCCTTACAGCACTTTAAAGAAGAGATACAATTTAGCGAAAGCTGCTTCTTGGACGGTGGATTCATTAGAAAATGCGGTATCTATTCTCAAAAGAGGAAGCATTTCGGTGTACAAAGTATCTCAGCAAACTGGCATTCCTTACAGTACTTTAAAGAAGAGATACAATTTAGCGAAAGCTGGTGATACTAGCTACAAAAACTCTCCTAAGCTGGGAAGACGTACTGTATTTAATGTTGCCCAAGAAGAAATACTGGCTAACCATCTTCGGACcatgtcaaataaattttatggtTTGACAAGAGAACAGATTCGCAAAGTATGTTTCAGTGTAGCTAAACAACTAGGTATTGAGGAACGGTTAAACCAAGTTAATCAAACTGCAGGAAAAGATTGGCTGGCTGGATTTTTGCAGCGTCATCCAGATTTAAGTATTAGAAAGCCTGAAGCTATCAGTATAAACAGAATCCTCGGATTTAACAAGACTGAGATAACGCTTTTTTTCAATAACTTGGAGAAATTGATGGTGCAACATTATTTCGAGCCTCAAATTATTTACAATGTAGACAAGACTGGTATAACAACCGTGCAAGAGACTGAAAAAAATATAGCTCCTAAAGGGCAAAGACGCGTCGGTTCTGTTACGTCATGGGAAAGAGGAAAGACGGTCACGGTAATATGTGCTATGAGTGCGTCTGGATCTTTCATTCCTCCGCTTTTCATATTTCCCCGGCAACATCACTCACCACAGCTGGACAAAGATGGACCACTGGGAGCCGTTTACACATGTTCACATAATGGCTGGAGTAACGAAAAGATATTTGTTTTATGGCTTCGTCATTTTATTAAACACACCAAACCTACTGCTGAACCACCCGTATTACTAATTTTGGATAATCACAATAGTCATGCTACTCTAGAAGCTTGGGAATTAGCAAAAGAAAACTATGTCATAATGCTTACCATTCCTCCACATTCATCCCACCGTCTACAACCTCTGGACGTTGCATTTTATTCTCCGCTTAAAAGAGCTTACAACAAAGAGTgcaatttatatataaaatcaaGGAATTTGATAAAAATTACTCCATACGAGATCGCTGGACTGTTTAATAAAGCCTACACTAGAGTGGCTTCTATAGATAAAGGAGTATCGAGTTTTAAAGCAACGGGAATATTCCCTATGAATCCTGGAGTTTTTAGTAATGATGACTTCATTAATGAGGCAGTCAGATCAGCTGTGCCGGTGGCTGATGTTCAACAGCAGCCAACTAGTGTCACTCCTATTCCATCTACATCAAATCAGGCTGTTAGTGAGCAACCATATACTAGCCCTGCAACAAGTCCATCTATTTTTTGTGGTCAGCAAATGGAACCAGAAATGATTCAGAGGGAAGGTGCTGTAACCCCAGATCCAATTCCATCCACATCATATTCAATAACAGAACGGCCTGCTATTCTGGACACACCCACAGTCAGATCTGTCGCAACTCCATCCAATATTGACTTTGCTAATGCTGTCTCCATTTTCAGCCCACGGCCCCAACAACTTATCTCTCAAAAAGAAAGACCCTTGAAGAACAAACAGCATTCTGAAATAATAACAAGCACTCCAATGAAATCAGGAAAATGTACCAAAAGCGAATGTATTAAGAAGAAACATAGCAAGAAAGAAACCAAAGAGATTAAAAGTAAGAAGACTACAACCAGAAACGAAAGGATCAGAAAgtcaacaaaatatttatttaaaagtgatGATGACGATTCATCTACTGATCAAGTAGACGAAAATGCTATCTGCGATGATCAGTCAGAATATTCTGAAGAGCATGATTTATGTGCAATTTGTTTAGACACTGGAAAAAGTGGGGAGATGTGGTACAGACGCAGAAGTTGCGGAAACTGGGCCCATAAAGAGTGTTCTGGCAGTGATAGTCCAGATTCCTATATTTGTGCATTTTGTGTGAATCCCTAA
- Protein Sequence
- MPRKRNRTTTKASWTVDSLENAVSILKRGSISVYKVSQQTGIPYSTLKKRYNLAKAASWTVDSLENAVSILKRGSISVYKVSQQTGIPYSTLKKRYNLAKAGDTSYKNSPKLGRRTVFNVAQEEILANHLRTMSNKFYGLTREQIRKVCFSVAKQLGIEERLNQVNQTAGKDWLAGFLQRHPDLSIRKPEAISINRILGFNKTEITLFFNNLEKLMVQHYFEPQIIYNVDKTGITTVQETEKNIAPKGQRRVGSVTSWERGKTVTVICAMSASGSFIPPLFIFPRQHHSPQLDKDGPLGAVYTCSHNGWSNEKIFVLWLRHFIKHTKPTAEPPVLLILDNHNSHATLEAWELAKENYVIMLTIPPHSSHRLQPLDVAFYSPLKRAYNKECNLYIKSRNLIKITPYEIAGLFNKAYTRVASIDKGVSSFKATGIFPMNPGVFSNDDFINEAVRSAVPVADVQQQPTSVTPIPSTSNQAVSEQPYTSPATSPSIFCGQQMEPEMIQREGAVTPDPIPSTSYSITERPAILDTPTVRSVATPSNIDFANAVSIFSPRPQQLISQKERPLKNKQHSEIITSTPMKSGKCTKSECIKKKHSKKETKEIKSKKTTTRNERIRKSTKYLFKSDDDDSSTDQVDENAICDDQSEYSEEHDLCAICLDTGKSGEMWYRRRSCGNWAHKECSGSDSPDSYICAFCVNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -