Nmun032216.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748308.1:12004236-12013293[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-06 0.0029 18.5 0.0 2 40 48 85 47 88 0.94 2 2 6.5e-06 0.0029 18.5 0.0 2 40 521 558 520 561 0.94
Sequence Information
- Coding Sequence
- ATGACACACTCAACTAAATACCCAAACAAGACTGACACGCCCAAACAAATACCTACACAAGACCCAATCACCACAAAACTAAGACTTAGTCCAAGAGCTGtGCTTCGCAGTAAAACTggtttaaaaagaaagagaatatGCCCTGATACACTGACAGCCGCTGTAAAAGAAGCAAAAACTGGCACTTCGATAAGAAAAGTAGCTGAAAACTATAAATTACCAAAGTCAACAATTTTTAAATACTTTAAGTTACATAAAAGCAATGATTTGAGGAATAGCATTCAGCTATTGCAGAATGACGTTAGAAAAGTATTTGACCCGGATGAAGAAATTTTGCTGtgcaaatatttaagaaaagctGCATTTCTACACATGGGTTTAAATACAAAACAATGTAGAGAGCTGGCTTACCAATATGCTGTTTCTAAACAGAAAACTAATCTGCCTGCTAACCGGGAAAAAAACAAATTGGCAGGAACTGGGTGGCTCCGTAATTTTCGACTTCGTTTCCCGGAATTATCTCTTCGCACACCCGAACCAACGAGCATAGCAAGAGCAACTAACTTTAACAGAGCAAACGTGAATGATTTCTTCCAAAATTTAGAATCGATTTATAATGTTGATGAGACTGGGATCTCCACTGTTCACAAGCCAGGAAAAGTATTGGCTCCTAAAGATATTCGCCAGCTAGGGAAGATGACTTCAGGAGAACGAGGAGTGAATACAACAATGATAGGCTGCATAAATGCTCTTGGCAACGCCGTGCCTCCTGTGTTCATATTCCCACGGGTTTTCTACAAAGACAACATGTTGAAAGGAGCTCCACCTGGTTCTTTGGGTGTTGCTAATCAATCAGGGTGGTCAACAGAACCGATTTTTAAAAAGTTCTTGGACCACTTTATTAAATTCGCTAAGCCAACAACTGAAAATCCAGTACTCTTAACAATGGACAATCACGAGACTCATATCACCATTGAGATAATTGATAAAGCCAGAGAGAATGGAATTATCTTATTGACTTTGCCGCCACATACATCCAAtccctccgtcgtattCCAAACCCGTCCAGATAACTTGGATCGAAACGAACTATTTGGAGAATCTGTTATTCAGGCCATCCCAAAACCAGTTTCGCCAATCCAGAAGGATGATCGGCTAATACCAAAACAACCTATTTTTCGAACTCCACTAAAGATTATAGATCCACAAATAACGCCTGAAACCGTTCGCCCATTTGAAAAAGCTGGCCCGCGAAAGGGTCTTCAACGTGGAAAAAAGCCCGGAAGAACTAGAATTTTGACTGACACGCCAGAAAAAGAAGAGATTCTAGGTGAAGCATTAAAAAAAGCTGAAAAGAAGAAAATAGCAGGCCAGAAAACGGACAAGAAAAAAAACGTAAAAGCCGCTCAAAGAAAAATTGTAACCAAAGCCCTTTCACAATCTGGTTCCTCAAAAGTTGACGTAAGTTGCTCCAAAAGTCATCCAACTCCTATGCTGGCTAATAATCTTTCTGAACCTGtGCTTCGCAGTAAAACTggtttaaaaagaaagagaatatGCCCTGATACACTGACAGCCGCTGTAAAAGAAGCAAAAACTGGCACTTCGATAAGAAAAGTAGCTGAAAACTATAAATTACCAAAGTCAACAATTTTTAAATACTTTAAGTTACATAAAAGCAATGATTTGAGGAATAGCATTCAGCTATTGCAGAATGACGTTAGAAAAGTATTTGACCCGGATGAAGAAATTTTGCTGtgcaaatatttaagaaaagctGCATTTCTACACATGGGTTTAAATACAAAACAATGTAGAGAGCTGGCTTACCAATATGCTGTTTCTAAACAGAAAACTAATCTGCCTGCTAACTGGGAAAAAAACAAATTGGCAGGAACTGGGTGGCTCCGTAATTTTCGACTTCGTTTCCCGGAATTATCTCTTCGCACACCCGAACCAACGAGCATAGCAAGAGCAACTAGCTTTAACAGAGCAAACGTGAATGATTTCTTCCAAAATTTAGAAGGGATTTATAATGTTGATGAGACTGGGATCTCCACTGTTCACAAGCCAGGAAAAGTATTGGCTCCTAAAGATATTCGCCAGCTAGGGAAGATGACTTCAGGAGAACGAGGAGTGAATACAACAATGATAGGCTGCATAAATGCTCTTGGCAACGCCGTGCCTCCTGTGTTCATATTCCCACGGGTTTTCTACAAAGACAACATGTTGAAAGGAGCTCCACCTGGTTCTTTGGGTGTTGCTAATCAATCAGGGTGGTCAACAGAACCGATTTTTAAAAAGTTCTTGGACCACTTTATTAAATTCGCTAAGCCAACAACTGAAAATCCAGTACTCTTAACAATGGACAATCACGAGACTCATATCACCATTGAGATAATTGATAAAGCCAGAGAGAATGGAATTATCTTATTGACTTTGCCTCCACATACATCCAATCCCTCCGTTGTATTGtcagggcatatttatccgagagggctataa
- Protein Sequence
- MTHSTKYPNKTDTPKQIPTQDPITTKLRLSPRAVLRSKTGLKRKRICPDTLTAAVKEAKTGTSIRKVAENYKLPKSTIFKYFKLHKSNDLRNSIQLLQNDVRKVFDPDEEILLCKYLRKAAFLHMGLNTKQCRELAYQYAVSKQKTNLPANREKNKLAGTGWLRNFRLRFPELSLRTPEPTSIARATNFNRANVNDFFQNLESIYNVDETGISTVHKPGKVLAPKDIRQLGKMTSGERGVNTTMIGCINALGNAVPPVFIFPRVFYKDNMLKGAPPGSLGVANQSGWSTEPIFKKFLDHFIKFAKPTTENPVLLTMDNHETHITIEIIDKARENGIILLTLPPHTSNPSVVFQTRPDNLDRNELFGESVIQAIPKPVSPIQKDDRLIPKQPIFRTPLKIIDPQITPETVRPFEKAGPRKGLQRGKKPGRTRILTDTPEKEEILGEALKKAEKKKIAGQKTDKKKNVKAAQRKIVTKALSQSGSSKVDVSCSKSHPTPMLANNLSEPVLRSKTGLKRKRICPDTLTAAVKEAKTGTSIRKVAENYKLPKSTIFKYFKLHKSNDLRNSIQLLQNDVRKVFDPDEEILLCKYLRKAAFLHMGLNTKQCRELAYQYAVSKQKTNLPANWEKNKLAGTGWLRNFRLRFPELSLRTPEPTSIARATSFNRANVNDFFQNLEGIYNVDETGISTVHKPGKVLAPKDIRQLGKMTSGERGVNTTMIGCINALGNAVPPVFIFPRVFYKDNMLKGAPPGSLGVANQSGWSTEPIFKKFLDHFIKFAKPTTENPVLLTMDNHETHITIEIIDKARENGIILLTLPPHTSNPSVVLSGHIYPRGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -