Nmun000066.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- CAUVZR010000006.1:53344-54777[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-12 1.7e-09 38.5 0.0 1 38 15 53 15 56 0.94
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAACGAACTACTACTAGACAAGACTGGGACCCGGAACACATGACAAGAGCTGTTCAAGCCGTATTTGATGGAAGTATGGGGTACTTGAAAGCTGCTCAAACTTACCAGGTGCCTAAATCTACATTGCAAGATCGAGTCAACAAATTCAGACAGAATAATGACCTGGTTTCTTCAACATGCAAGGGCCTGGGACGTTTCAAACCAATTTTTTCTTCTTCTCAAGAACAAAGTCTAGTTGACCATATCTTACTTATGGAAAAACGTTTGTTTGGCCTTACCTATAAGGATCTACGCCGCTTAGCGTTTCAATTCGCAGAAGCTAATAATATTGACCACTGTTTCAATAGAATTTATAAATTTGCGGGAGAAGATTGGTTGTCTGGGTTCATGAAACGACACCCACAATTATCACTACGTGCGGCCGAGCCAACATCCGTGGCTAGAGCTATGGGCTTCAACATGGTCagtgtaaataaattttttgatTTGCTCGAGGGACTTATAGATCAATATAAATTTCTACCTACAAAGATTTATAATGTTGACGAAACGGGTGTGACAACGGTTCCTAAAAAACAAAGCAGAATAATAGCTTTGAAAGGAAGAAAGCAGGTCGGTATAGCTAGTTCAGCAGAAAGAGGTCAGCTTACTACTGCTGTGCTTTGTGTCTCTTCTTCTGGAAATTATGTTCCTCCACTGCTGATATTTCCACGTGTTCGAATGAAGGCTGAACTCCTAGACGGGGCACCACCAGGTACGGTTTCAGTTTGTCATCCCAGTGGATGGATACAGAGTGAAATTTTTGTGGAGTGGCTAAATCATTTCATATCGACCATAAAACCCAAAAAAGATGATCCCGTCTTACTATTGCTGGACGGCCACTCAACGCATACCAAAAATCTTCCGTTGATAGAAAAAGCCAGAGATAGTGGCGTTATTATGTTAAGCTTTCCTCCACATTATACTCATAGACTACAACCTCTAGATGTGAGTGTCATGGGTCCAATTAGTACGTACTACACCCAGGAGGTGAACATTTGGCTTAGGAATAACCCTGGCCGAGTTGTTACTCAATATCAGCTGGCGCGCCTTTTTGGTGCTGCTTATTGTAAGGCGGCCACGATACAGAATGCAGTGTCTGGCTTTTTAAAAGCAGGCATATTTCCGACAAATCGGaacatattcaatgaagctGATTTTGCTGCAGCTGAAACAACTGACATACATGCTTCAACGCCTTTAACTTCCCTAGATCCATATCATAACCCGATGCCATCAACTTCAACCATGCCAATCGTTCCGGCTCCAACAACTTCTTCTGCTCCGTTTTTTATGACAACCCCGTCAATCTCAACTAGTGATGCTGTGTCTCCGGCAGATATAATGCCAGTTCCGAAAATCACAGCTGAAAAAAGGTAA
- Protein Sequence
- MPRNYKRTTTRQDWDPEHMTRAVQAVFDGSMGYLKAAQTYQVPKSTLQDRVNKFRQNNDLVSSTCKGLGRFKPIFSSSQEQSLVDHILLMEKRLFGLTYKDLRRLAFQFAEANNIDHCFNRIYKFAGEDWLSGFMKRHPQLSLRAAEPTSVARAMGFNMVSVNKFFDLLEGLIDQYKFLPTKIYNVDETGVTTVPKKQSRIIALKGRKQVGIASSAERGQLTTAVLCVSSSGNYVPPLLIFPRVRMKAELLDGAPPGTVSVCHPSGWIQSEIFVEWLNHFISTIKPKKDDPVLLLLDGHSTHTKNLPLIEKARDSGVIMLSFPPHYTHRLQPLDVSVMGPISTYYTQEVNIWLRNNPGRVVTQYQLARLFGAAYCKAATIQNAVSGFLKAGIFPTNRNIFNEADFAAAETTDIHASTPLTSLDPYHNPMPSTSTMPIVPAPTTSSAPFFMTTPSISTSDAVSPADIMPVPKITAEKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075312;
- 90% Identity
- iTF_01075313; iTF_01075312; iTF_01075311;
- 80% Identity
- -