Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1e-11 4.7e-09 37.1 0.0 4 39 32 68 29 72 0.89

2 3 5.5e-12 2.5e-09 38.0 0.2 3 39 85 121 83 124 0.92

3 3 1.2e-09 5.5e-07 30.5 0.0 2 30 139 167 138 168 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1e-11	4.7e-09	37.1	0.0	4	39	32	68	29	72	0.89
2	3	5.5e-12	2.5e-09	38.0	0.2	3	39	85	121	83	124	0.92
3	3	1.2e-09	5.5e-07	30.5	0.0	2	30	139	167	138	168	0.94

Coding Sequence: CAGCCTCATCTCAGTGGGGAAGATACAAGTGACTCTAGTGGGAGGCAAATGTCGCCGTTACCCCGCAACAGCCCAAAGAGTTGGACTCAACAAGACATGGACCGCGCGCTTGATGCACTACGGAATCACCAGATGAGTCTTACGAAGGCTTCTGCAACGTACAGTATCCCGTCGACAACACTGTGGCAGCGTGCGCACCGCTTGGGCATCGACACGCCCAAGAAGGAAGGCGCCGCGAAGTCGTGGGGCGACGCCGACCTGCGCGCTGCACTGCACGCTTTACGCGCTGGGGCTATCTCTGCAAACAAGGCCAGCAAGGCATACGGCATCCCCAGCAGCACCCTGTACAAGATAGCTCGGCGCGAGGGCATTCGCTTGGCCGCTCCGTTCAACGCCGCGCCCACCTCCTGGCGCCGCGCCGACCTGACGCGCGCGCTCGCCGCCATCCGCGCCGGGCACACCTCCGTGCAGCGCGCCGCGCACACCTACGGCATACCCACTGgctTGCAGGATGATATTATAGAAGATTTATTAGCAGAGTCAGAAATTGAAGACTTTCTGCCCTCGGATGAAGATACCGGTGATCCACTTTTCAAGTGA
Protein Sequence: QPHLSGEDTSDSSGRQMSPLPRNSPKSWTQQDMDRALDALRNHQMSLTKASATYSIPSTTLWQRAHRLGIDTPKKEGAAKSWGDADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRADLTRALAAIRAGHTSVQRAAHTYGIPTGLQDDIIEDLLAESEIEDFLPSDEDTGDPLFK

Sequence clustering based on sequence similarity using MMseqs2