Nfer002391.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nowickia ferox
Gene Symbol
-
Assembly
GCA_936446695.1
Location
CAKZFO010000017.1:4122700-4126460[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 4.1 4e+02 2.8 4.7 1 23 238 262 238 262 0.91
2 7 0.00034 0.033 15.6 0.9 1 23 265 288 265 288 0.96
3 7 0.0004 0.039 15.4 0.4 2 23 295 317 295 317 0.95
4 7 0.98 96 4.7 3.9 1 23 358 380 358 380 0.98
5 7 0.17 16 7.1 0.7 1 23 389 411 389 411 0.97
6 7 0.0069 0.68 11.5 0.8 1 23 416 438 416 438 0.95
7 7 0.00033 0.033 15.7 2.6 1 23 514 536 514 536 0.98

Sequence Information

Coding Sequence
atgAATAATCAAATGAATAGTGCAGTGCGCAAGATACATAATCTGCTCTCAAGTGGAGCAGTTACTGTCACAGGCCCAAATCAGCCGCGtattcttaaacaaaaaattgttggGTCAGGGACTACTCCAACAACCGTGACAACAGCACCCCTTGCGAATAATGTACAACAACAGCAAGTTGTCACTACATCCATAAATCGTTGTTATGTTTGCGATGACCCATTAGGTGCGAACCAGGCACAACATCAGCTAACAGAAATGCAGACAACgcacacaacaacaaaatttcctAATAAAATTGGTCAGTTGGTTGGTGATGCCTTTATGGTGATTGTAAGTGTTGAGGATGTTGTTTGTTCACGTTGTACAAATCTCATCAACTATTTGGATCGTTTAGAAAATGATGTCGAACGTGTTCGAAccaatttaatgaatttgttgcataaaaaatatggatTAAATGATGACAACGGTGGCAATACAAATGTCACCACTGTAGTGGGAGGTGGTACACCAACTATTGCAACTTCCAATGTAACAAATAATATATCTTCGTCCACATTGCAAGCACCACCTAATAAATTGCAGAAACTTAATAGTGGTGCAGCAGTTAGCGCAGTCCAACAAATGAAAATATCTACACAATCTCCAGCAAATATCCCACAACAATCGGCTGGCACACAAACGCTCCAgcgcaaaacaacaaaaatttacaaatgttTGTCATGCGATTACAAAACATCTGATATGCGACTATTTAACACACATTATGAAACATGCAAACATCAAAACTTCCAATGCAaaaattgcaagaaaattttcccCAACTTTGGAGCTATGAAGCAGCACATGGTTCGTGAGCATAATACACCGATGGACAATACTTGTGCTGTTtgtcatataaattttgtaagtGAATCGGCTCTACGTAAACATATGGAAATAAATCATAGTACCAATGTGGTCGTTACAAGTACAACAACATTGCCAGTATCGCAAAATGCTGCACCAGCTGCTGATTCTATAACAGCAGTGAATGCACAAGCTTCTACGGGTACTACTACACCGCTCTACACTTGTAATCATTGTCAATTCAAATCCACCGACAAAATAATATTCGATGAGCACATGCGCAAACATATGGCTGGAGTGAAATCGAAGCCATTTAAATGTCGGTTGTGTGCTCAGCGTTTTGAGACGCGTGAGGCGGCAACAACTCACGCTAAGCAGCATCAAGGCAATGTGTTCAAATGTGGTACTTGCTCTATGACTTTCCCCAAGAGAGAAATGCTAGTTAAACACTTCGAAGAGCATCAGCAGCAACAGAATACGCAGCaaatccaacaacaacaacagcagcagcagacTCAGCAACATCAAATGATTACTATTAAACAGCAATCTTCCCAGAATATGCTGACAACACAGAAACTTTTGCAGGAAACAATTGACGAAGCTTTAAGCGATTCAACCACTCCAGTAACAACTACAGCTACAACAGATGTGACAGGGGGAGCTTCTGCCAATAATATACGATTCTTCTCGTGTCATATTTGTTCCTTGACATTTATACAAGAGAATTACTACAATCAACACATGGAAACTCACAGGAGAGGAGATAATGCTACTAACACCACTACAACTGCCGCAACCACACACAAAAAGACTTCAAATGCAGTAGTTGGAAGTAACTCTTTGTCCACATTAAATGCAGCCGCTTTGTTAAGTGAAGCATCCCAGCAAGAAACCAATGAAATAGTTCATCACAACGCTGACCTTAATGTTCATCACCAGCATCAGCAACAGAACGCTTCATTGGGTAATGCTGGTAATACTACTATTTCTGAAGCAGATATTGAaagcattttcgaaaaaatgcaTTCCGACAAAGGTGATAATGGGATAACGGCCACCACAACATCATCCGGCAATGGTAGCAACGACCAAATGGTTATAACTTCACAAGCTGGCACTGGCGGGGGCATAACGTTTAACATCACTATTCCAGGCCAAGAGTCAGGTGGAGTAGTTTCGACTAGTGAAGATCATAGTACTAATACTACCACTACAACTACCGCTCCAGTGTCAGTTAGCATAGATATGCCCATGCTGGATCAACCGGATGATTCAACACATGCATCgacaacgacaacaacaactacCACAACTGCATCAACCAAGCTGAAGGTAGAGTCACCAAAACCATCCAGTACCGGACCAGTCAGCATGCCGAGCTTGGACGATGACAATGAAGAGCAAGCCGTTAATTCGACAAATGCGTCGAGCGAGAACTCCAAGAATATGGAAGAAGCTGCGCATCGTAATAGTGAACAAACATCATCCTCAAGAAACCAACCTGCCACAGATGAAGGGGATAATAAAGCAGAAGAGTCTGCATCAAACAATCATTCAATAGAACAGCCATCTGATAGCCAGACCACCCACGAAAGTAACACTATAACAGACAACCAACAAGGGGAATCTGCAGCAGGCGATGAAGTTCACCAGCAACAACAAGAGGTTACTGAAACGGGTGAGCACCAACAATCTCATGAGCATCATGAATTAGCTGCTGGTTCGGATGGCGGTGGTGAAGGTGAACAACATGTCGCAATGGAATTAGACGAAGCTACAATGCAGGCGCAAGTTGATGGTggtcaaattaaatttattctcaACGAAAGTGGACAACTTTTGCAACTTGATAATCACATTCTTACGGATGCCGACGGTAATCAAATTCTTGTCCAAGATCCAGAGCAAATACAGCAGCTTCTCCAGTCTGTGGGCGTATTGCAGTCTGGCGAAGGTCTAGACGGTGAAACTTTACAAATGATGACTGATGCCAACGGACAAATGGTGTTGGTGCAGGGAGAAAATAATGAAACTCAATTAATTGATGCCTCTCTTCTGAATGCTGATGGTCAGTTGGTCATTCAACAGTCACAGGACGGCGATGGTGGTGCTCATGTCATTGGAGAAGACGGCACTCGTATTCCTGTATCTGTTTCCTACACAGAAGATGGTCAACCGATTGTTCAAGTCCAACAACAGGTGTTAGAAGCAGCCTCGGCAGGCGGCGAAGGTGTAATCGAAAAAGATGTCGCAAGCGTAGAAGGAGCATCAGCGGGTGACACAGATAAAATTGCCATTGGCTCGGATTAG
Protein Sequence
MNNQMNSAVRKIHNLLSSGAVTVTGPNQPRILKQKIVGSGTTPTTVTTAPLANNVQQQQVVTTSINRCYVCDDPLGANQAQHQLTEMQTTHTTTKFPNKIGQLVGDAFMVIVSVEDVVCSRCTNLINYLDRLENDVERVRTNLMNLLHKKYGLNDDNGGNTNVTTVVGGGTPTIATSNVTNNISSSTLQAPPNKLQKLNSGAAVSAVQQMKISTQSPANIPQQSAGTQTLQRKTTKIYKCLSCDYKTSDMRLFNTHYETCKHQNFQCKNCKKIFPNFGAMKQHMVREHNTPMDNTCAVCHINFVSESALRKHMEINHSTNVVVTSTTTLPVSQNAAPAADSITAVNAQASTGTTTPLYTCNHCQFKSTDKIIFDEHMRKHMAGVKSKPFKCRLCAQRFETREAATTHAKQHQGNVFKCGTCSMTFPKREMLVKHFEEHQQQQNTQQIQQQQQQQQTQQHQMITIKQQSSQNMLTTQKLLQETIDEALSDSTTPVTTTATTDVTGGASANNIRFFSCHICSLTFIQENYYNQHMETHRRGDNATNTTTTAATTHKKTSNAVVGSNSLSTLNAAALLSEASQQETNEIVHHNADLNVHHQHQQQNASLGNAGNTTISEADIESIFEKMHSDKGDNGITATTTSSGNGSNDQMVITSQAGTGGGITFNITIPGQESGGVVSTSEDHSTNTTTTTTAPVSVSIDMPMLDQPDDSTHASTTTTTTTTTASTKLKVESPKPSSTGPVSMPSLDDDNEEQAVNSTNASSENSKNMEEAAHRNSEQTSSSRNQPATDEGDNKAEESASNNHSIEQPSDSQTTHESNTITDNQQGESAAGDEVHQQQQEVTETGEHQQSHEHHELAAGSDGGGEGEQHVAMELDEATMQAQVDGGQIKFILNESGQLLQLDNHILTDADGNQILVQDPEQIQQLLQSVGVLQSGEGLDGETLQMMTDANGQMVLVQGENNETQLIDASLLNADGQLVIQQSQDGDGGAHVIGEDGTRIPVSVSYTEDGQPIVQVQQQVLEAASAGGEGVIEKDVASVEGASAGDTDKIAIGSD