Nfer007613.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000055.1:228715-233103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0042 0.41 12.2 0.5 3 23 299 320 297 320 0.95 2 9 0.037 3.6 9.2 4.9 3 23 462 483 461 483 0.92 3 9 0.0028 0.27 12.8 0.9 2 23 578 600 577 600 0.95 4 9 0.00048 0.048 15.1 0.2 2 23 854 876 853 876 0.94 5 9 0.031 3 9.5 0.1 2 23 926 948 925 948 0.91 6 9 0.016 1.6 10.4 3.6 2 23 989 1011 988 1011 0.96 7 9 0.15 15 7.3 4.2 2 23 1025 1047 1024 1047 0.92 8 9 0.00044 0.044 15.3 0.8 3 23 1109 1130 1108 1130 0.96 9 9 0.028 2.8 9.6 0.8 1 23 1223 1245 1223 1245 0.99
Sequence Information
- Coding Sequence
- ATGGCCGCTTCTATATATGCAACCCCACCGCCTGACTTAAGTAGCGAGGATACCGCTTTATCCGATGTATCCAATACTTCAtctacaacaacaaacaatgcaacagcagcagcagcaacagcaacattaaaacaattaacatctacaacaacaacaacaacaacacatacAACAAACACCACCAACAATTCATGTGAAGAAACTTCATTTAAAGCAActatatcatcatcatcatcagcagcagcagcactaGCAGCAGTTACTGacacaactacaacaacatcatcaaataaCACAACTGACAACAGCAAACAACAATCTCGCACAATATCTGATGCTCTTAAAGACATCAGCAAACCGAACGATAACATCAACACAATATCCAACCCCACACAATGCTCTTCCAATCCAGCCGCCATGGGAAGCTCTACAAATGCTGCCCATTGTAATAATGAAAACGATGATATCGAGGATAACaatcagcagcaacagcagcaaagTGCGACAGCAACAACAATGGCTGCCGTAGCAGCAGCAGCTAATGCAGCCATGCAACTTCAATTATTAGAAGCCATAAATGATGCTGCCAAAAAACGACGCAAACAGCACAATCCCAGTAGAATGGATGAAGACATTAACAGTGCAAATCCAACAAATTCGTCAGCCTCAGCGACTGTCGATTTTGAGGATAAACTATCGAAAATGTTTTTACCCAAGTCAATGGAACAGCTAAGGGAAACATTTGAATTGTTACAGCAAcagcaaaatattgaaaacatatcAAAAACTCAGGAACCAAATGTCAACAACAAAACGAGAAAACTCTCCCATATAGaagaacagcaacagcaacaacaacaccatCAGGCGTTTAATAATCCATATCATACCTTCTGTAAGGAGTGTggtgaaaatttcgaaaatgaaTTTAAACTTAGTTTACACATGTTGCAAGAACACAATGAAAACACAGATAGTTTTGCGAACAACCAGGCAGCAGCATCCAATTTGACACCTCTGGATATATTATCCTCCGTTAAGATTAAATTAGAAAGGCCTGAATGTGACTCGCCCACTTCgaatcaaaatttggatcacAGTACTAATACAACTGAACAAAGTCGGCAACAAAATAGTTCCTCTTCTGGCAGTATGCTAACGAACGGTAAAGaccagcagcaacagcaacagcaacagcagcagcagcaacagtgGATGGGAACAGCTGCAATGGCACCCATGAGTTTCCCCTTTCCACCGGAAGCTGCTACTGCGGCGGCCTTACAGGCCGGCGGCTATTTGCCATTGCTTGGTGTGCCTGGTTTTCCAAGCGTTGACGGCCTCAACCGGCCTCCCTTACGAATTTTCAATCCCGAAGCTTTCTGCGAATTGTGCAACAAAGAGTTTTgcaacaaatattttcttaaaactcACAAAGCCAACAAGCATGGCATTTACGACCCCATCGGTGATGGTCTCAGTTCCtcgcagcaacaacagcagaaCAACATGAATACTATGAATCAAATATTTCAACTGCAaatgcaacagcagcaacaacagcagatGCACATGGAATTTGCTCAACAGAAACTGTTAAACGAGCAACAACGACGGGATAATGAAAACACTTCCGCCGCGCTGGCATCAACCTCAAATGTCGCAACAAAGGCCACACACAGCTCCAGTAACCAACAAACACAGGCTTCACCACCAGCTCCAGCACCGGTCTATTGTGATATTTGCTCAAAACGTTTTACCAATGTCTTTGCCATGCGTCGTCATCGGGCCAAAACTCATGAACAAAGTTCCAACAATACTTCGCAGCGTAGCAGCCCTTCCGAGGCATCCAGCAATTCAATCGACTCGACTTTAAACTCTTCACAGACGCCAGAACATACAACAGCCAAACAATTTCAAATGCCGGAAGGTTTTCGCCAAGACTTTGTCTTGGAACAGGAAGAAGTCTCCTTTACCCCACAACCTCGCAAACTATCGCCCCAGTTGCAGCAACAGGCTCGCGAAGCCAACTTTGCTTATGATAAGCTGAAACGCTTGGGTGTTGCGAATCCTGACGCATTTTGCGAAATCTGCTGCAAAGAGTactgcaataaatattttttgcgtacCCACAAATGGAAACGTCATGGTATTTTTATGCCTCCGGAAGAAACGGATAATCCCCAAAAGCTCTCCACTTGGCCATTCATGAATATGGCTGGCATGCCAGTAAATTTAATGATGGCTCAACGCATGATGGCAGCACCTCAATCCAACATAGACGAAATGTCTCAACAACCCATTAAACGCATTAAAATAGAGCAACCTGATGAGGATGAGGTAATAAAAGATGTGAATAATGATGAGAACCAGGAAAATCGGAGTGAAAATAATCAGGTCCTGAGTGTGCCCTCAACACCAGAACCCAGCAAATCGGTAAACGATGGCCAACCAACAGCAATGGCACACAGTCCCGAAGCTGCCATGGGCttacaaaatttgcaaaaattgcaAACCATGATACAACAGCTGAGCGATTTGAATGGCAAAAGACCGATTTCTTGCCATTTATGTGGGCGAGAAACGGAAAATCAATATGAACTGCAAGCCCACATAATGGCTGAACACAATGCAGGAGGCATGGAGGGTGGACTGCCAGCCCTGAATTTTCCCTCCCAACTCCTTATGCAGCAACAAGCTTTGCTCAAACAGTCGCCGAGTAGCTCTCCCAGCTCTCTTATGCCCCTCATGGGCATATCCGGTTCGGGAGAACTGCGCTGCACACCCTGTGAAaaagaatttacaaatttgCCAGAATTTCAAAAACATATCGCTGAAGTTCATCTGCTAAACAATAGCTCAGGCAGCCCTTCACGTGAGGGCTTCATAACACCCGAAAGACCAATTAATTCCTCGCTGGTGCCGAGCAGCCGACCTCCCTACACCATCACACCCACCAGCAGTTACTGTGAGATTTGCAATAAGGAATTGTGCAATAAGTATTTTATGAAAACTCATATGCAACGCATGCATggcatagaaattgaaaatggTGCCCAGATAGGCGGTGTGGTGTGCAATATTTGCAATAAGGAGTTGTGTAGTAAATATTTCCTAAGAGTGCACAAGCACAATACGCACGGCATCATCGAAGATGGAGCTCCTTTGCCGACACCCAGGCAAAACGGTTTGAATTTAGAAACACTGCAACAACAAATCATGGAATCAGAAGGCTTGAATAGAAACTTAAGCATGAGTCCATTTGGTAGTGGTGGCTCGGAAGGTAAAAATGAATCTTTCCCCAATTCTCCCTACACAGAAATATGCAACCTTTGCACTAGACGTTTCCGCAATGCGAAATGGTTACGAAATCATCTTTTAAGTGAGCACGGGTCAGCTGGTGTTGAAAAGGGGCGGGAGCTGGAACAACAATATGGCGGCAACCTAAGCAAGCCCTCAAGTCCAACTCTGAAAGTATCCAATGGCTCTAGTTCCGCTGGAACCTCAGCTGCAACAAACACGGCCAATACTGTACCCTCACCTGCTCAGTTAGCTCAAGCTTTGCAAAATCTTAATGCCCAACATTTGCTACAAAATATGCCCAAGAATAATGTGGCTTCTACTTTTAGTGGGGAACAAAACCTGCAAACGCCACAACTTAAAGAATACCAATGCACCCTCTGCCCCTTTACGACTCCCTACTATGCATTCCTATTCATACATGAACGCACACATTCCATTATCAGCAACAATGAACGGGAACACGAACAGGAACAGATTAACGAATATTCTTATAAGCAAGAGAAATTAGAAGAACACAAAGAAGAACAAACGCGTTCCGTTGATGAAGGTGGAACCTTAAAGAGAAAACACACACGAGATCTAAAATCCCCTATAGAAATTGTAACTCTGGATCAGGAGGAAGACTGCGAAGATGTGATTGAAGTTAAGCCACACTTTAGCGAAATCACAAAACCTTTAACCATATGTTCATCCTCTCCCACCGAAATCACCTCCACCACCAGCCGCGAGGACTTGAAAAAACAAACTTCACCTAAAACTTCGCTTATGAAAGATAACAAAGATACCAGACATGCTTCCCTCTCACCGCAGGCTCTCAGATCAACAGCTTGCTCACCGGTCTTTAGAAATCTGCATCGTCAACTATTGCAAGAAATTGCACTACAGTCCGGCAAGCCGGCGTCATATGCTGTGCCGCAGCGCGAAGAGTCGGCACCAACCCAAATGCAGGCATTTGTTATGGAGCCCGTGGTCCCAAACGATGAGACGGATGTAAGTAATCGATTTATGCCCGCTATTGTTTACTTACCGGTCAAAGAAACTCTAACAGGTACTATGaaattatcatttaatttaacacctgtttaa
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNTSSTTTNNATAAAATATLKQLTSTTTTTTTHTTNTTNNSCEETSFKATISSSSSAAAALAAVTDTTTTTSSNNTTDNSKQQSRTISDALKDISKPNDNINTISNPTQCSSNPAAMGSSTNAAHCNNENDDIEDNNQQQQQQSATATTMAAVAAAANAAMQLQLLEAINDAAKKRRKQHNPSRMDEDINSANPTNSSASATVDFEDKLSKMFLPKSMEQLRETFELLQQQQNIENISKTQEPNVNNKTRKLSHIEEQQQQQQHHQAFNNPYHTFCKECGENFENEFKLSLHMLQEHNENTDSFANNQAAASNLTPLDILSSVKIKLERPECDSPTSNQNLDHSTNTTEQSRQQNSSSSGSMLTNGKDQQQQQQQQQQQQQWMGTAAMAPMSFPFPPEAATAAALQAGGYLPLLGVPGFPSVDGLNRPPLRIFNPEAFCELCNKEFCNKYFLKTHKANKHGIYDPIGDGLSSSQQQQQNNMNTMNQIFQLQMQQQQQQQMHMEFAQQKLLNEQQRRDNENTSAALASTSNVATKATHSSSNQQTQASPPAPAPVYCDICSKRFTNVFAMRRHRAKTHEQSSNNTSQRSSPSEASSNSIDSTLNSSQTPEHTTAKQFQMPEGFRQDFVLEQEEVSFTPQPRKLSPQLQQQAREANFAYDKLKRLGVANPDAFCEICCKEYCNKYFLRTHKWKRHGIFMPPEETDNPQKLSTWPFMNMAGMPVNLMMAQRMMAAPQSNIDEMSQQPIKRIKIEQPDEDEVIKDVNNDENQENRSENNQVLSVPSTPEPSKSVNDGQPTAMAHSPEAAMGLQNLQKLQTMIQQLSDLNGKRPISCHLCGRETENQYELQAHIMAEHNAGGMEGGLPALNFPSQLLMQQQALLKQSPSSSPSSLMPLMGISGSGELRCTPCEKEFTNLPEFQKHIAEVHLLNNSSGSPSREGFITPERPINSSLVPSSRPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEDGAPLPTPRQNGLNLETLQQQIMESEGLNRNLSMSPFGSGGSEGKNESFPNSPYTEICNLCTRRFRNAKWLRNHLLSEHGSAGVEKGRELEQQYGGNLSKPSSPTLKVSNGSSSAGTSAATNTANTVPSPAQLAQALQNLNAQHLLQNMPKNNVASTFSGEQNLQTPQLKEYQCTLCPFTTPYYAFLFIHERTHSIISNNEREHEQEQINEYSYKQEKLEEHKEEQTRSVDEGGTLKRKHTRDLKSPIEIVTLDQEEDCEDVIEVKPHFSEITKPLTICSSSPTEITSTTSREDLKKQTSPKTSLMKDNKDTRHASLSPQALRSTACSPVFRNLHRQLLQEIALQSGKPASYAVPQREESAPTQMQAFVMEPVVPNDETDVSNRFMPAIVYLPVKETLTGTMKLSFNLTPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399010;
- 90% Identity
- iTF_01399010;
- 80% Identity
- -