Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000001.1:4296952-4299571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00019 0.018 16.5 0.3 2 23 201 223 200 223 0.96

2 11 0.81 79 5.0 5.2 1 23 289 312 289 312 0.96

3 11 1.4 1.4e+02 4.2 2.2 2 23 329 351 328 351 0.94

4 11 7.8 7.6e+02 1.9 7.2 1 23 358 381 358 381 0.97

5 11 0.012 1.2 10.7 2.9 2 23 457 479 456 479 0.95

6 11 1.7e-05 0.0016 19.8 2.2 2 23 487 509 486 509 0.94

7 11 0.17 16 7.2 1.8 1 23 534 556 534 557 0.94

8 11 5e-05 0.0049 18.2 1.5 1 23 563 585 563 585 0.96

9 11 2.3e-06 0.00023 22.5 1.1 1 23 591 613 591 613 0.99

10 11 7.7e-07 7.5e-05 24.0 3.2 1 23 619 641 619 641 0.99

11 11 0.0031 0.3 12.6 0.2 5 21 651 667 647 671 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00019	0.018	16.5	0.3	2	23	201	223	200	223	0.96
2	11	0.81	79	5.0	5.2	1	23	289	312	289	312	0.96
3	11	1.4	1.4e+02	4.2	2.2	2	23	329	351	328	351	0.94
4	11	7.8	7.6e+02	1.9	7.2	1	23	358	381	358	381	0.97
5	11	0.012	1.2	10.7	2.9	2	23	457	479	456	479	0.95
6	11	1.7e-05	0.0016	19.8	2.2	2	23	487	509	486	509	0.94
7	11	0.17	16	7.2	1.8	1	23	534	556	534	557	0.94
8	11	5e-05	0.0049	18.2	1.5	1	23	563	585	563	585	0.96
9	11	2.3e-06	0.00023	22.5	1.1	1	23	591	613	591	613	0.99
10	11	7.7e-07	7.5e-05	24.0	3.2	1	23	619	641	619	641	0.99
11	11	0.0031	0.3	12.6	0.2	5	21	651	667	647	671	0.86

Sequence Information

Coding Sequence: atgaatgaaaattcgATGCAAAAGTGTAGGACATGTCTTAGAAGTAGTGCCAAGACGGTTCCTCTAACCGGTCACGCAACAGGATGTAACCCTAGAAGGACATATGGTCAACTACTTAAGGAATATGCCAATTTAAagTGCAGTGCTGACTATGAGTGTTTTATGCCTCAATATTTGTGTCTTCCATGCACAAATGCGTTGAGAAATTCTTATCAGTTCGTTAAACAAGCTCAATACTGTAATAACAAAGTTATAAACGCTATTTCTAAACAACTGGAATGTTTACTTGAAAGAACGATTGATCTACCTGAAAATGAAAACGATTtggaaaaaaatcttgaaataaaAGAGGAAAGGACTAATGATGAGTGCCAAAATACTGAAAGAGATGAATTAAGCTTAGGTGTTTTGAATAAAGAAGAAACCAAAAATATTAAGACAACAGATCAGAACAACGATGTTGAAAACATTCTAGAAATTattgatatTGACGAAAATGTTTCGCATGATTATTTACCATTGCAATGTTCTCCGACAATCGAAAATTGTGAAATTATGACTAGTATCAAAATTAACACTGACAAGACTCAAACAGACTCAGTCTGCCCCATATGTGAACAAACTTTGAGCAGCCACGATGACTTAATTAAACATGTGCGTATAAAACACGATATTGAAAATCCTAGTAAATTCTTTCACAAAGCAAAACTAGAAGGAAAGATACCATTGGAATGTTccgacaataataaaattgaaacaaatttgCACAGCCatgataatttaattaaacatttgcgCATACAAGATGACGTTGAAAATCCTAATAAATTCTTTCACAATGCAAAAGTCGAGGAACAGGAAGTTTTTAGTTGCAAGTTTTGTTCCGCTGAatacacaaaacaacaaaactatTTATACCACCTCAAACATAAACATTATAGTAGCCAAACAAAAGAAAGAGAAATGCAGAAGAATAAAATGATCAAATGTCATTTATGTAATTATATAGCTGGAACCCATGCCTCTTTGAGCTATCACAAACGTGCAAAGCATGGCACGGAAAGGGACAAGTTTAAGTGTAATTTCTGTTCGAATAtgtattttcagaaatttatattatttaagcaCATGAAAAATTGTCATAAGGAAGAAATAAAAACTCTTAAGGCTGAAGGAGAAACGAGAACTGATACTACTACCGATAACAACATTATAAATAGACAAAGGAATGAATCGCTTTCAACTGCAAGTTCTGACAGTGAAACGGAAGAGGAGGAAAGAGAGCAGTTCAGTGATGAAGAGTTTATAAGAAACATATTGAATATTAAAAGAAGACAAACAAAGTTAACGCGTAAAACTTTGGCCATACGATGTGATGAATGTGGTAATATTTATAAAGATCACAGGTCGCTTTATACTCATCAAAAACACGTACACATAACCCAAGATAAATACATTCCATGTCCACATtgtgataaaaaatataaacataaagcTGGTCTTAAGGTTCATATGGAAAATAAACATgttaaaaaaactaatatttcgAAAACATCCAGTGAAATTACGAAACAAACAGCTAAAGCAAAAGAGAAACGTTTCATGTGTACTGAATGTTCCTACGTTTGCTCCACAATAGCCATCCTTAATATACACGTTATGCGACATCATGCAGGCGAAAGACCTTATAAATGTGATATTTGTTTCAAATCGTTTATAGTTAAATACGATTTGAAAATTCATCGTTACTTGCACACCGGTGAACGCCCTTATAAATGTCCAATTTGCTCAAAAGGGTTTCGGGACAAATACCAGGTGGTGAAACATAAACGGATACACAACAGTGAACGTCCTTACAAGTGTAAGGAATGTAATAAAGGTTTTACACTGCCGCATAACTTAACAGTGCACAGACGTACGCATCTGAAGGCGAAAAAACTAAATTGTATTGTATGTGGAAAAGTGTTTGAAAATAGATCGTTATTAAATTTACATCGCATAAATGAAAATCATCATGATGAAGATGTATAa
Protein Sequence: MNENSMQKCRTCLRSSAKTVPLTGHATGCNPRRTYGQLLKEYANLKCSADYECFMPQYLCLPCTNALRNSYQFVKQAQYCNNKVINAISKQLECLLERTIDLPENENDLEKNLEIKEERTNDECQNTERDELSLGVLNKEETKNIKTTDQNNDVENILEIIDIDENVSHDYLPLQCSPTIENCEIMTSIKINTDKTQTDSVCPICEQTLSSHDDLIKHVRIKHDIENPSKFFHKAKLEGKIPLECSDNNKIETNLHSHDNLIKHLRIQDDVENPNKFFHNAKVEEQEVFSCKFCSAEYTKQQNYLYHLKHKHYSSQTKEREMQKNKMIKCHLCNYIAGTHASLSYHKRAKHGTERDKFKCNFCSNMYFQKFILFKHMKNCHKEEIKTLKAEGETRTDTTTDNNIINRQRNESLSTASSDSETEEEEREQFSDEEFIRNILNIKRRQTKLTRKTLAIRCDECGNIYKDHRSLYTHQKHVHITQDKYIPCPHCDKKYKHKAGLKVHMENKHVKKTNISKTSSEITKQTAKAKEKRFMCTECSYVCSTIAILNIHVMRHHAGERPYKCDICFKSFIVKYDLKIHRYLHTGERPYKCPICSKGFRDKYQVVKHKRIHNSERPYKCKECNKGFTLPHNLTVHRRTHLKAKKLNCIVCGKVFENRSLLNLHRINENHHDEDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01398872;
90% Identity: -
80% Identity: -