Nfer015080.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000112.1:60925-66320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.3 2.3e+02 3.6 0.1 2 23 320 342 319 342 0.92 2 10 0.021 2 10.0 0.0 6 23 351 368 351 368 0.99 3 10 0.031 3.1 9.4 7.6 2 23 375 397 374 397 0.95 4 10 0.00013 0.012 17.0 1.1 3 23 404 424 403 424 0.98 5 10 2.2e-05 0.0021 19.4 1.2 2 23 431 453 431 453 0.95 6 10 0.28 27 6.5 0.6 3 23 459 478 457 478 0.91 7 10 0.00035 0.034 15.6 2.6 2 23 487 509 486 509 0.95 8 10 1.2e-05 0.0012 20.2 1.8 1 23 518 541 518 541 0.98 9 10 1.7e-05 0.0017 19.7 0.3 2 23 548 569 548 569 0.98 10 10 0.0038 0.37 12.3 1.3 1 22 575 596 575 596 0.96
Sequence Information
- Coding Sequence
- ATGAGTTGCCTTTTGTGCTTAGAAGTAACTGAGAGTTATAAGGATTTGATAGTTTTTAACTCCAGCGAATGGCAGGATCTAAACATGCAGTATATTATTGAAAAGCATCTTTGGAAATTGGAAGTTTTAAATAGTCAATCCTATATATGCCACGGGTGTTGGCAAGAATTATACAGCTTCCATaagttttacttaaaacttGAAAAAGCCCGCTCAAATTTAAATGGTTTATTAAACACTGAAGAAGTTAGCAAAGAAGCTGTTGAAACAGGAAACGGAGAAAAAACTGAGAAAATTGTTAATATTATTGCAAAAGTAGCACTACCTGAAcctgaaattttatttcttaaagagGAATATCctacagatatttttgaaaaggaAGATGAAGTGGAAGTAAGTTATCTTAAAACTAATAGCAAGCGTAAATGCTCTAGGACGAAAAGTTCACAAAGTAAAAATAGTTCGAGGAAAAAATCCTCGAACGATAAGATAAACGAAGTAAAATCCAACGGAAATCCACATGAAATTGGTAGAAAATTTGAAATAGAAAGAACAGAAAACGACAAGTTCGATGAAAATGGAGCTGAAATTGATTCAGAACTAAAAACAGTAGAAAATGATGCTGATGTCAACAAAATGGAAGATGATTTAGAATCTAATGATAACAAAATTATTGCAAGAAAAAGTTCGAGGCAAAGATCCAATAAAGATAAAAGTGATACTGAAATCAAAGAATTAAAGTTGATTGAAAATCTAGATGAAATTGACAAAAAGTTAGAAAACAGAATGAAATTCGATGAAAATGTAGATGAACTTGAAAcaaaattagaattaaaaacaacagaaaatgacgctaaacaaaacaaaatggaaaaagACGATCAGAATGATAGTTCCACAAAGTTAAACAACTTATCTAATGTAGACAAATTCGTAGCCGAAAATTTGCAACTCACTTGTGACATTTGTAAAATCCCAATGGATACATTTTCCGCAATAGTCAAACATTACAGAGAGACACACAATCAGCGTGGGTATGTTAAGTGCTGCGGTATTAAGTTTATAACTCGTGTTGAATTAATCGATCATATTAATATCCACCAAAACCCCGAATATTTGAAATGCAAATACTGTACCAAAACGTTTGGTAAACGTACATGCCTGAAGCTACATACAAAACATGTTCATGAGGAAAAGCGGGTGGATTGTGACATTTGTGGCAAAAGTTTAGTAACTGAATTATGTTTAAAAAGGCACATGCTTACACATAATCCTCAAGAGAAAAGATCTTGCAAACAATGCGGTAAATCCTATTCATCTAAACTCTCCCTATACAAGCACATGCAATTAGTTCACGTTACAAATATAATTTGCCATTTATGTGGCAAATCTATCATAATGTACGACTTCACACGTCATATGGCACAGCATGAAGGAAAACCTCTACCAAAGGTAAGCTGTAAAATGTGCGATCGCCAGTTTTCAGATAATAGATGTTTAAATCAACACGTGCGGGCGCGTCATCCACCGGAAGGAGCTataactgaatttaaatgtgctAAGTGCCCAAAAGTGTTTTCAGCTGTTCATAGTCTTAAGACGCATATGAGAAAAGTACACGATAATGCATATGTAAGGAAGTGTACATTGTGTGATAAAACATTTAAAGGACCCGGCGCCCTAagggagCATATCTCAAGGCATAAGGGTGAACCCTTATACGTTTGCGGCTTTTGtcctagaaaattttattccagTGGAAACGTGCACACACATCGCAAAACATGTTCCGGAAATCGAAAAGAAACATGTGTAGCGAAAAGAACAGAAGATGAATAA
- Protein Sequence
- MSCLLCLEVTESYKDLIVFNSSEWQDLNMQYIIEKHLWKLEVLNSQSYICHGCWQELYSFHKFYLKLEKARSNLNGLLNTEEVSKEAVETGNGEKTEKIVNIIAKVALPEPEILFLKEEYPTDIFEKEDEVEVSYLKTNSKRKCSRTKSSQSKNSSRKKSSNDKINEVKSNGNPHEIGRKFEIERTENDKFDENGAEIDSELKTVENDADVNKMEDDLESNDNKIIARKSSRQRSNKDKSDTEIKELKLIENLDEIDKKLENRMKFDENVDELETKLELKTTENDAKQNKMEKDDQNDSSTKLNNLSNVDKFVAENLQLTCDICKIPMDTFSAIVKHYRETHNQRGYVKCCGIKFITRVELIDHINIHQNPEYLKCKYCTKTFGKRTCLKLHTKHVHEEKRVDCDICGKSLVTELCLKRHMLTHNPQEKRSCKQCGKSYSSKLSLYKHMQLVHVTNIICHLCGKSIIMYDFTRHMAQHEGKPLPKVSCKMCDRQFSDNRCLNQHVRARHPPEGAITEFKCAKCPKVFSAVHSLKTHMRKVHDNAYVRKCTLCDKTFKGPGALREHISRHKGEPLYVCGFCPRKFYSSGNVHTHRKTCSGNRKETCVAKRTEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -