Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000001.1:4302794-4305072[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.52 51 5.6 3.3 1 23 229 252 229 252 0.96

2 12 3.6 3.5e+02 3.0 3.3 2 23 269 291 268 291 0.95

3 12 0.5 49 5.7 3.6 1 23 298 321 298 321 0.96

4 12 0.0024 0.23 13.0 0.4 2 23 411 433 411 433 0.96

5 12 4.8e-06 0.00047 21.4 3.5 1 23 440 463 440 463 0.95

6 12 0.053 5.2 8.7 2.5 1 23 483 505 483 506 0.95

7 12 0.0002 0.02 16.3 1.3 1 23 512 534 512 534 0.96

8 12 1.3e-05 0.0012 20.1 0.7 1 23 540 562 540 562 0.98

9 12 8.3e-08 8.2e-06 27.0 4.2 1 23 568 590 568 590 0.98

10 12 2.3e-05 0.0022 19.3 1.1 1 23 596 618 596 618 0.99

11 12 5.5e-05 0.0054 18.1 5.3 1 23 624 646 624 646 0.99

12 12 0.096 9.5 7.9 5.2 1 19 652 670 652 673 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.52	51	5.6	3.3	1	23	229	252	229	252	0.96
2	12	3.6	3.5e+02	3.0	3.3	2	23	269	291	268	291	0.95
3	12	0.5	49	5.7	3.6	1	23	298	321	298	321	0.96
4	12	0.0024	0.23	13.0	0.4	2	23	411	433	411	433	0.96
5	12	4.8e-06	0.00047	21.4	3.5	1	23	440	463	440	463	0.95
6	12	0.053	5.2	8.7	2.5	1	23	483	505	483	506	0.95
7	12	0.0002	0.02	16.3	1.3	1	23	512	534	512	534	0.96
8	12	1.3e-05	0.0012	20.1	0.7	1	23	540	562	540	562	0.98
9	12	8.3e-08	8.2e-06	27.0	4.2	1	23	568	590	568	590	0.98
10	12	2.3e-05	0.0022	19.3	1.1	1	23	596	618	596	618	0.99
11	12	5.5e-05	0.0054	18.1	5.3	1	23	624	646	624	646	0.99
12	12	0.096	9.5	7.9	5.2	1	19	652	670	652	673	0.95

Sequence Information

Coding Sequence: atggatgggGATATTTTACAAATGTGTAGAACATGTCTCAGAAGTAGTGCCAACACACTTCTCCTAACCAATCACGCAACAGGATGTAATCCTAGAAGAACTTATGGTCAACTACTCAAGGAATATGCTAACTTGGAgTGTACTGCTGATTATGAGCGTTTTATGCCTCAATTTTTATGTCAATTATGTTGCCGTGAGTTGAGAAATACATATGCGTTTATTAAACAAGCCCAATACTGCAATACCAAACTCATAAATGTCATTTCCAATCAACTGGACTGTTTGCAAGAGAATACAATTGATCTGCCagaaattgaaagcgatttggAAAAAcatcttgaaataaaaatggaagaaaatattGCTGATTCGCCAACCAAAAATCAAGAAAATTCTGAACAATATGAATACAGTTTCGGAAATTTGAACGGAGAACTTGACAACATTGAGACAATAGACCACAACGAAGATGTTAAAGAAATAGAATTTCTTGATGAGGAACAAAATGATTGGAATGATGATTTACCAACATTTGATCatgataaaattattgataattCCCAAGTTAACACTGACGACCCACAAACAGACTTTGATGATCTAATTGAGTATGAGCATACTCAATATGATATTGAAATCCCAAATGAATCCCTTCCCAAACATGAAGCCGAGAAAAAGCAAGTTTTTAGTTGCCAGTTCTGTTCTGCTGAATATAATAGTAAATATACTTATCTATATCACCTCAAGTATAAACATAATATTAacgaaacaaaagcaaaacagcGGAAGAAGCCTAAAACTATAAAATGTTGTTCATGTAATTATATAGCTAGAAGCTATTCGGCTTTTTATAAACACAAACTGACCAAGCATGGCACTGAAAATAAAGAGtataaatgcaaattttgttcGCACGTGTATTTACAGAAATTTGACTTATTAACGCACGTAAACAATTCACACAAAGAACTGATAAAAACTGATCAAGATGAAGCAGAAATTAAGGAAGAAACGGGAAATGGCACAACCGCTTTGGAACCAGAGAATTTCATAGATAAAAATGCAGAAATTTTTAGTGATGATAATATtccattaattgaaaaaattaactcaTCGAATTGTAACAGTGAAATAGAGGAGGAAAAAGAACAGTTCAATGATGAAGAGTTTGTAAGGAACATTTCGGATATTAAGAGCCAGACAGCATTATCATCAAAATCTCTGGCCAGACGCTGTGATGAATGCGGTAATGTTTACAAAGACTACAAATCtctttacatacataaaagATATGTACACATAAGCGAAGATAAGTACCATGAATGTCCACATTgtggtaaaaaatataaacgaaaaaacgatctaaaaattcatattgaaaatactcatagttccaaagatccctctgaaattaaaaaacgaatACGCAAACCAAAAGAGAAACGTTTCATGTGTTCAGAATGTTCCtacatttgtgcaacaataaCTCTCCTTAGAGTACACGTTAGTCGACACCATTCAGGCGAAAAACCTTATAAatgtgatttttgttttaaatcgtTTGTGGTACCATACGAATTGAAAATTCATCGTTATTTACACACCGGTGAACGTCCTTACAAATGTTCAATTTGTTCAAAAGGGTATCGGGACAGTTCTCTTTTGGTTAAACACAAGCTTATACACACTGGTGAACGTCCCCACAAGTGTAATGAATGTGATAAAAGTTTTACACGACCGTACAATTTAACGTTGCACAAACGAACGCATCGAAGTGAGAAACCTTACCAATGTTCTGAATGTGTAAAAGCATTTAAACGTGCGGATAAATTGAAATTTCATATGCGCGTACACTCTGAGCTCAGGCCCTACAAATGTACTGAGTGTGATAAGGCATTTAAATACCATGACGTATTACAATCGCATATGCATAAACATACCGGAGAAAAGCCGTTCTTTTGCAAAACTTgtggtgaaacattttcatTACGATCATCCTTGCATTATCATTGCTCAAAATATGATCATCGCAAGTAA
Protein Sequence: MDGDILQMCRTCLRSSANTLLLTNHATGCNPRRTYGQLLKEYANLECTADYERFMPQFLCQLCCRELRNTYAFIKQAQYCNTKLINVISNQLDCLQENTIDLPEIESDLEKHLEIKMEENIADSPTKNQENSEQYEYSFGNLNGELDNIETIDHNEDVKEIEFLDEEQNDWNDDLPTFDHDKIIDNSQVNTDDPQTDFDDLIEYEHTQYDIEIPNESLPKHEAEKKQVFSCQFCSAEYNSKYTYLYHLKYKHNINETKAKQRKKPKTIKCCSCNYIARSYSAFYKHKLTKHGTENKEYKCKFCSHVYLQKFDLLTHVNNSHKELIKTDQDEAEIKEETGNGTTALEPENFIDKNAEIFSDDNIPLIEKINSSNCNSEIEEEKEQFNDEEFVRNISDIKSQTALSSKSLARRCDECGNVYKDYKSLYIHKRYVHISEDKYHECPHCGKKYKRKNDLKIHIENTHSSKDPSEIKKRIRKPKEKRFMCSECSYICATITLLRVHVSRHHSGEKPYKCDFCFKSFVVPYELKIHRYLHTGERPYKCSICSKGYRDSSLLVKHKLIHTGERPHKCNECDKSFTRPYNLTLHKRTHRSEKPYQCSECVKAFKRADKLKFHMRVHSELRPYKCTECDKAFKYHDVLQSHMHKHTGEKPFFCKTCGETFSLRSSLHYHCSKYDHRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01397806;
90% Identity: iTF_01397806;
80% Identity: -