Nfer003975.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:5006846-5009625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0011 0.1 14.1 1.6 1 23 19 42 19 42 0.97 2 15 0.00065 0.064 14.7 1.3 2 23 73 94 73 94 0.95 3 15 0.04 3.9 9.1 0.7 1 23 171 194 171 194 0.97 4 15 0.042 4.1 9.1 2.1 2 23 202 223 201 223 0.97 5 15 0.02 1.9 10.1 0.2 2 20 283 301 282 304 0.94 6 15 0.013 1.3 10.6 4.1 1 23 377 400 377 400 0.94 7 15 0.0011 0.1 14.1 0.5 1 22 407 428 407 428 0.96 8 15 0.0007 0.069 14.6 0.9 2 23 483 504 482 504 0.96 9 15 0.0048 0.48 12.0 0.1 2 19 531 548 530 551 0.93 10 15 0.00019 0.019 16.4 6.1 1 23 597 620 597 620 0.98 11 15 0.0063 0.61 11.6 0.7 1 23 657 680 657 680 0.97 12 15 0.0063 0.62 11.6 0.7 1 23 752 775 752 775 0.97 13 15 6.7e-06 0.00065 21.0 0.7 1 23 803 825 803 825 0.98 14 15 0.003 0.29 12.7 1.1 1 23 831 853 831 853 0.97 15 15 0.18 18 7.0 0.8 1 19 858 876 858 882 0.81
Sequence Information
- Coding Sequence
- ATGCAGAAATTATGTCGCAGGCATATATTTATGGAGCACAGACAAAAGCAATTGTTCCAATGCCAATTTTGCGATAGCATTTTTAAACAGAAGAAGAGTCTAGTTTTACATATTGAACGAAAACATCCTGGCGAATCATTTGATTCCAATACAAAACAATTAGTTCGTTTGTTTGGAGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAGCGGAATGTAAGCTGTGTGGTTCTACTTTTACGAATAAAAAAACACTTCTTCAGCACTTAGATAACCATAGTGAGGACAGTACTCTTCACAGCTTAAAATTAAGTAGTGATGTTATTCAGCGTTGGTTTCCAAATATGAAGGATTTGCAAGTAATAAAAACCATGATATGTAAAGACATTCGAGAAAAAAACTGGGTCAaatattacacaattttaaatgacTTTTCCTATGAAATGTCGATTAGTGATACAGATGCAGAAGATTTGGAAGAAGAATCAGAAGTATCTGCCAACAAATATAAATGCGAATTGTGTGAAAGAgattttttgtacaaatatcAAGTGTTTGCACATTTGAGAGAGGATCatttaaacgaaaaaattactttgaaatGTAGCCGCTGCAAGCTGGAATTTATATCTACAAAAATGTATGAGCAACACAGACAAACTCACTGTCAAAATGAACATAAACTACTGATTTGCTCTAATTGTCCTGGCAAGTTTCTCTGGctcgaaaatatgaaaaaacacAATTGTGTTAcgaaagtattaaattttgaaaaaattgaaaatgataATATAAGTGAAAGTTACAATGAAGTAATCCGATCATCGCCAAAAACTATCATAAGATGTGGTCTTTGTGAAATGACATTTGAAAAACTGCGCGATTTACGACAACACATGCCTTTGCATGCCGATGGCAAAACTGGAGTTGACTTTGATGgttgtttttatgtaaatcaatttgaaaatgtatcCACCAATCGCGAATTGTTACAACAGAATATTAAAAATGCCTTCACGAAACGTCAAATAAGTCAGATGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGATATTTCAGATTCGGATAGCAAAGAAGATGATGCTGATGGTGAAAAGAGTTATTTGTGCGAACTCTGCTATGAAACGTTTAAAAAGCGGAAACTTCTGTTTAATCATCAAAAACATGAACACAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGACGCAATACGTTAGTATTGACTTGCTAGAAAAACATATGAAGAGAGACTGTTGGAATGAACATCGACGAGTTGCTGAACAATCCGATTGTTGTAAAGAACGTTTTATATGGCCGGAAAACATGTTGAGACATAAAGAAATACAgCGATACATACGTATTAAAAATTCACTGTCAGAGAAGTTGTGTCGTGACAATATCCAAATTTGCTATTGTTTCTTATGTcctaaaaatttcgcaaatgcTGTTCTTTTAAATGATCATTTGATGCGCCATCGGTTAACACCATCCACCATCAAAACTGTTGCAAGCACAATACATTCCTTATGGTGGCCAAATGGCAGAAAgataataaaatgcaaaatatgtaaTGAAGTATTTTCAAGTATTGCCAAATTAAATGAACACTTCTCTCTAAAAGATCCTAAAAACTTGTGTGGCGCCAAGCAAGATTATCTGGCAAATTACTCGATTACTAATCAAATGGGGTATGAATTACATTTAGAGCTGGATTCAGAAACAGAAActgaagaaaatgaaaatatatcgCCATATACATGTTGCATATGTAGTAAATCCTTTAAGCGAAAGTTTCAAATAACTCAACATCAAAGATCCATGCACAATTATGAAATGTTGGAACTCAAATGTGAACGTTGTGTTTTCAGAACTGTATCACAGaaagttttaGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTGTAATTTCAAATTTATGTGGCAAGAGAACCTCGAACAGCATATTTCGATATTTCATAATTCAAACGTTTTCTTCAAAACATTGGATTTAGCTAACACGACGTTTACAAATACTCAATGCCTTGAATTAAAAGAAGCTTCACAGAATGATTTGTCATTAGCATTACATCAAAATCATGCAGAAGATGAGTTTCAATGTATAATTTGTGGAATTTACATTATCAAGAATGATTATTCAGAACATATTAGGAGACACAAATATGGCAAACCTTACAATTGCACTCTTTGCGAAATGGTTTTTTTATCGCGTTCCGCTTTAGATAAGCATAGGAGAATGAGCCATAAGATTTTATGCGCCGACGAACGACCATACAACGAAGTTAGTTTATATGTGCATCGGCGCAAACACTCTAGTAAACGTCCTTTTAAATGTACACTTTGCGAGAAAGCCTTTGTCAGTAATTGGCTATTACAAGAGCACATGCGCTTTCACACTGGCGAGCATCCATATCAGTGTACCGTTTgtcagaaaaaattaatgagttcGCGCTCTTTGCAGCAGCATTCGCTTGTTCATACTAGTAAATCCTTTATATGTGAGATTTGCAATAAAGCCTTTAGTTGTGGCCCATACCTCAGACAGCATCGTGTCCAAATGGGCCACCATTcagaaaataattga
- Protein Sequence
- MQKLCRRHIFMEHRQKQLFQCQFCDSIFKQKKSLVLHIERKHPGESFDSNTKQLVRLFGERLYSKPLLLPRAECKLCGSTFTNKKTLLQHLDNHSEDSTLHSLKLSSDVIQRWFPNMKDLQVIKTMICKDIREKNWVKYYTILNDFSYEMSISDTDAEDLEEESEVSANKYKCELCERDFLYKYQVFAHLREDHLNEKITLKCSRCKLEFISTKMYEQHRQTHCQNEHKLLICSNCPGKFLWLENMKKHNCVTKVLNFEKIENDNISESYNEVIRSSPKTIIRCGLCEMTFEKLRDLRQHMPLHADGKTGVDFDGCFYVNQFENVSTNRELLQQNIKNAFTKRQISQMYQAIDKDGKEMDISDSDSKEDDADGEKSYLCELCYETFKKRKLLFNHQKHEHKDVSMPFTCKECKTQYVSIDLLEKHMKRDCWNEHRRVAEQSDCCKERFIWPENMLRHKEIQRYIRIKNSLSEKLCRDNIQICYCFLCPKNFANAVLLNDHLMRHRLTPSTIKTVASTIHSLWWPNGRKIIKCKICNEVFSSIAKLNEHFSLKDPKNLCGAKQDYLANYSITNQMGYELHLELDSETETEENENISPYTCCICSKSFKRKFQITQHQRSMHNYEMLELKCERCVFRTVSQKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQENLEQHISIFHNSNVFFKTLDLANTTFTNTQCLELKEASQNDLSLALHQNHAEDEFQCIICGIYIIKNDYSEHIRRHKYGKPYNCTLCEMVFLSRSALDKHRRMSHKILCADERPYNEVSLYVHRRKHSSKRPFKCTLCEKAFVSNWLLQEHMRFHTGEHPYQCTVCQKKLMSSRSLQQHSLVHTSKSFICEICNKAFSCGPYLRQHRVQMGHHSENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -