Basic Information

Insect: Nowickia ferox
Gene Symbol: Clamp
Assembly: GCA_936446695.1
Location: CAKZFO010000092.1:3187421-3190446[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.6e-05 0.0016 19.8 2.6 1 23 138 160 138 160 0.99

2 7 1.2e-05 0.0012 20.2 1.0 1 23 448 470 448 470 0.98

3 7 7.2e-06 0.00071 20.9 0.1 1 23 476 498 476 498 0.99

4 7 4.8e-06 0.00047 21.4 3.2 1 23 504 526 504 526 0.99

5 7 2.8e-06 0.00027 22.2 0.4 1 23 532 554 532 554 0.98

6 7 2.4e-06 0.00023 22.4 0.4 1 23 560 582 560 582 0.98

7 7 0.00014 0.013 16.9 0.2 1 23 588 610 588 610 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.6e-05	0.0016	19.8	2.6	1	23	138	160	138	160	0.99
2	7	1.2e-05	0.0012	20.2	1.0	1	23	448	470	448	470	0.98
3	7	7.2e-06	0.00071	20.9	0.1	1	23	476	498	476	498	0.99
4	7	4.8e-06	0.00047	21.4	3.2	1	23	504	526	504	526	0.99
5	7	2.8e-06	0.00027	22.2	0.4	1	23	532	554	532	554	0.98
6	7	2.4e-06	0.00023	22.4	0.4	1	23	560	582	560	582	0.98
7	7	0.00014	0.013	16.9	0.2	1	23	588	610	588	610	0.96

Sequence Information

Coding Sequence: ATGATGGAAgatatcacaaaaaatattatatttacaaatgctCTTGGGGCAAATGTACAACCCATACAATACCAAACTGCTGATGGTACAATTTTAAAGCAACCTAAAATCGAAGGACAAAAGGAGCAACCTACATTCTATTATACCACAACAAATGGCAACGGGACCACAGTAAATTTAGCTCAACTTGCCACAGATGATAACAAAACATGCTATATTGCTCAACCAGTGGGAGGATACAATTATGCCTTAGTGAATGGCATGcagttgaatcaattaaatcaaGGCGGAACCATTGGTATAGCTACTTTAGACTCACAAGGAAGGTTACAAATAGTCAATCAAAATAAACCTATAGCTACTTCTTTGCAGACTATATCGCCCATACAAAATACAATATCAAACATAAGTTTCAAGTGCGATGTTTGTGGTTTAATGTTTTCGCACTTGGCGTTGCTGAATCATCATAAACGTATACACGCCCAGGATGGTAGTGATCAACAACATCAGCAAAATCAGCAACAGGATGCAATCGTAGTTAATGCTCAAGGTTTAGTCCAAACTCAAAATATTATAACCGAAAATGGGCAAATGGGGCAAATACAAATTGTGGCTACTGAGACTTTAGAGCCATCAGCAGTCCttcagcaacaacagcagcaattacaacaaaatcagcaacaacaacagcatcagcaacaacagcaccagcagcagcaacaacaacagcaacagcagcaagcAAACGAGGTACAAGTAAACAACAGCACAGGTACTGTGGGCAAAGCCCTTAAATTAGAACAATGTAAATGCACCACTTGTGGTGTTCAAATTCTACAGCCTGTTAAACGCAAATTATCGAAAACTACCCGTTGCGATAACTGCTTACAGAGCGATCAGGCATTGGCAGCCGCGCAACAGGTGACACCTACTCAAATATTTGTAGCGCCTGATggtgaaattaaatttgaaatgaaCGAACTACAAAGTGGCAATTCCGAATCGTCAATGGACTCGCTGAATGCTCAAAATATGTTGCAAAATCACATACAGCCGGTGCAAATAATCGCTTCAAATAGCCAGCAAGTGCAGATTTTAAACCAAAACAGTAACCAGCAAGCAGCTACATCGTCTAACAACGACGTGACCACAAATATTAAAAGGGAAAATTCTCAGGGTGGCACATCAACAACGGcagtgaagaaaaaatttacccAACCAAAAGTGACGAAGTGTAATAAGTGCAATGGATCTGGAGTAGTATTTGCTGGTTCCGGCGCGCCAGCATCGAAGCAACAGTGTTCGGGCCAATCAGTATTGAAATCAGAaaatcctAAACCTTTCACTTGTAATATTTGTGGTGGTACGTTTTCCCGCTATTCAAGTCTATGGTCTCATAAAAAATTGCACAGTGGTGAAAAGAACTACAAGTGCACCATATGTGGCTTAGCCTTTGCCAAAGCAGTCTATTTAAAGAATCATGCCCGCATCCACACCGGAGAGAAGCCCTACAAATGCCAAACTTGCGGTATGCAATTCTCCCAATCACCACATTTGAAAAACCACGAACGTACACATAGTGGTGAACGACCTTATGTGTGTGAAGTATGCGACAAGGGCTTTGCCCGTCACGCTACCCTGTGGAATCACAGGCGTATTCATACAGGCGAAAAGCCCTACAAATGTGATATATGTGGTTCAGCATTTTCGCAAGCTGCACATTTGAAAAATCATGCCAAAGTTCATTCAGGAGAGAAACCATTTAAATGTGATATATGCTCAGCGGCATTTGCAGATCGCTTCGCTTTAAAACGCCATCGTGGTATACACGAAAAGTATGGACAAACTGCTCCTAGACAACCGGCCCAAGTCCCGCAAAGCCAAAACCAGCACGACAACGGATCGGGGCAACAAATTGTTATACAAAAGCAAGAAATACCCGATATGGATGATGATGCTCAACACGAAGTGATAATATCAGGTTTATAG
Protein Sequence: MMEDITKNIIFTNALGANVQPIQYQTADGTILKQPKIEGQKEQPTFYYTTTNGNGTTVNLAQLATDDNKTCYIAQPVGGYNYALVNGMQLNQLNQGGTIGIATLDSQGRLQIVNQNKPIATSLQTISPIQNTISNISFKCDVCGLMFSHLALLNHHKRIHAQDGSDQQHQQNQQQDAIVVNAQGLVQTQNIITENGQMGQIQIVATETLEPSAVLQQQQQQLQQNQQQQQHQQQQHQQQQQQQQQQQANEVQVNNSTGTVGKALKLEQCKCTTCGVQILQPVKRKLSKTTRCDNCLQSDQALAAAQQVTPTQIFVAPDGEIKFEMNELQSGNSESSMDSLNAQNMLQNHIQPVQIIASNSQQVQILNQNSNQQAATSSNNDVTTNIKRENSQGGTSTTAVKKKFTQPKVTKCNKCNGSGVVFAGSGAPASKQQCSGQSVLKSENPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHEKYGQTAPRQPAQVPQSQNQHDNGSGQQIVIQKQEIPDMDDDAQHEVIISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01162455;
90% Identity: iTF_01397807;
80% Identity: -