Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000001.1:4106858-4109128[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.8 4.7e+02 2.6 0.1 2 21 8 27 7 28 0.92

2 11 6.8e-05 0.0066 17.8 0.3 2 23 218 240 217 240 0.96

3 11 0.19 19 7.0 0.6 2 23 320 342 319 342 0.96

4 11 0.0018 0.17 13.4 4.5 1 23 349 372 349 372 0.98

5 11 0.0036 0.36 12.4 0.2 2 23 451 473 451 473 0.95

6 11 1.2e-05 0.0012 20.2 2.1 3 23 482 503 481 503 0.95

7 11 0.17 17 7.1 1.9 1 23 525 547 525 548 0.95

8 11 7.7e-05 0.0076 17.7 1.5 1 23 554 576 554 576 0.96

9 11 1.1e-06 0.00011 23.4 2.3 1 23 582 604 582 604 0.99

10 11 1.5e-07 1.4e-05 26.2 1.8 1 23 610 632 610 632 0.99

11 11 0.003 0.3 12.6 0.2 5 21 642 658 638 662 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.8	4.7e+02	2.6	0.1	2	21	8	27	7	28	0.92
2	11	6.8e-05	0.0066	17.8	0.3	2	23	218	240	217	240	0.96
3	11	0.19	19	7.0	0.6	2	23	320	342	319	342	0.96
4	11	0.0018	0.17	13.4	4.5	1	23	349	372	349	372	0.98
5	11	0.0036	0.36	12.4	0.2	2	23	451	473	451	473	0.95
6	11	1.2e-05	0.0012	20.2	2.1	3	23	482	503	481	503	0.95
7	11	0.17	17	7.1	1.9	1	23	525	547	525	548	0.95
8	11	7.7e-05	0.0076	17.7	1.5	1	23	554	576	554	576	0.96
9	11	1.1e-06	0.00011	23.4	2.3	1	23	582	604	582	604	0.99
10	11	1.5e-07	1.4e-05	26.2	1.8	1	23	610	632	610	632	0.99
11	11	0.003	0.3	12.6	0.2	5	21	642	658	638	662	0.86

Sequence Information

Coding Sequence: atgaatgaaaatacaGTGCAAAAGTGTAGGACATGTCTTAAAAGCAGTGCCAACACAGTTCCTTTAACCACTCATGCAAGAGGATGTAATCCTGGGAGAACTTATGGTCAACTACTTCAGGAATATGCCAATGTGGAGTGTATTACTGATTTTGAGGGTTTTATGCCTCAATATTTGTGTCTCCTGTGTAGTAATGAGTTGAGAAATACTTGTGCGTTTATTCAACAAGCTCAATACTGCAATAACAAACTCATAAACGTCATTTCCAAAAAACTAGAATGTTTAAAAGAAAGAACAATTGATCTACCAGAAAATGCAAATGATACcgaaaaaaatcttgaaaggaCAATTGATCTGCCAGAAAATGCAAACGATTtcgtaaaaaatcttgaaataaaAGAGGAAAGGACTAGTGATGAGTGTCAAAATACTGAAATTGATGAATTCAGTTTAGGAGTTTTGAATAAAGAAGAACCCAAAAATGTGGAGACAACAGATCACAACGATGTTGAgaacatactaaaaattattaatatCGACGAGAATGATTCGAATGATGATTTACCATTGCAATGTTCTGCAGCAAccgaaaacaaaaaagttattccTATTTTGAATATGAACACTGACAAGACTCAAACAGACTCCTCAGTCTGTCCCATATGTGAAAAAATGTTGAGCAGCCATGATGACTTAATTAAACATGTTCGTATACAACACGATATTGAAAATCCTAGTAAATTCTTTCACAAACCAAAACTAGAGGAAGAGTTACCACTGGAATGTTCTTCAACAAccgataataataaaaatattgctaatTTTACTGACAACAGACatcataatttaattaaatacttgCGCATACAATATGACGTTGAAAATCCCAGCACTTTGGTTCACAAACCAAAGCTCAGGGTAACAAAGGGAAAACAAATACAAAGGAATAAAATGATCAAATGTCGTTTATGTAATTATGTAGCTGGAACCTATGCCTCTCTGAATTATCACAAACGTTCAAAGCATGGCACGGAAAAGGACAAGTTTAAGTGTAATTTCTGTTCGAACATGTATTtccagaaatatttattattgaagCATATGAAAACATATCACAAGGAAGAAATAAAAACTCTTAAAGCTGAAGAGGAGATAAAAGGGGAAACGACAACTGACACTACTGccgaaaacaatattttaaatagGCAAATGAATGAACTGCTTTGGACTGCAAGTTCCAACAATGAAACGGAAGACGAAAAAGAACAGTTCAGTGATGAAGAGTTTATAAGAAACATTGTGAATATCAAAAAaaggcaaacaaaattttcgtcCAAACATTTGGCTAGACGATGTGATGAATGTGGTAATATCTATAAAGACCAAAAAGCGCTTgccattcataaaaaatacgtgCACATAAGCGAAGATAAGTACAGTTTATGTCCACATtgtggcaaaaaatataaacgaaaaaCCGATCTTAGAattcatattgaaaataaacatattgAAAAGTCAAATACTGCCACTGAAATTAAGAGACCACCACCTAAAGCAAGGGAGAAACGTTTTATGTGTACAGAATGTTCCTATGTTTGCTCCACAATAGCAATCCTTAATATACACGTTAATCGACATCATACGGGCGAAAGACCTTATAAATGTGACATTTGTTTCAAGACATTTATAGTTAGATATGATTTGAAAGTTCATCGCTATTTGCACACCGGTGAACGCCCTTACAAATGTCCAATTTGTTCTAAAGGGTTCCGCGACAACTCTCACATGGTTAAACATAAACGGATACACAGCAGTGAACGTCCGTACAAGTGCAAGGATTGTAATAAGAGCTTTGCAGTGTCGTATAACTTATCGGTGCATAGACGAACGCATCTGAAGCAGCAAAAACTAAATTGTATCGTATGTggtaaagtttttgaaaatagaTCGTTATTAAATTTGCATCGCATAAATGAAAATCATCATGATGAAGATAtataa
Protein Sequence: MNENTVQKCRTCLKSSANTVPLTTHARGCNPGRTYGQLLQEYANVECITDFEGFMPQYLCLLCSNELRNTCAFIQQAQYCNNKLINVISKKLECLKERTIDLPENANDTEKNLERTIDLPENANDFVKNLEIKEERTSDECQNTEIDEFSLGVLNKEEPKNVETTDHNDVENILKIINIDENDSNDDLPLQCSAATENKKVIPILNMNTDKTQTDSSVCPICEKMLSSHDDLIKHVRIQHDIENPSKFFHKPKLEEELPLECSSTTDNNKNIANFTDNRHHNLIKYLRIQYDVENPSTLVHKPKLRVTKGKQIQRNKMIKCRLCNYVAGTYASLNYHKRSKHGTEKDKFKCNFCSNMYFQKYLLLKHMKTYHKEEIKTLKAEEEIKGETTTDTTAENNILNRQMNELLWTASSNNETEDEKEQFSDEEFIRNIVNIKKRQTKFSSKHLARRCDECGNIYKDQKALAIHKKYVHISEDKYSLCPHCGKKYKRKTDLRIHIENKHIEKSNTATEIKRPPPKAREKRFMCTECSYVCSTIAILNIHVNRHHTGERPYKCDICFKTFIVRYDLKVHRYLHTGERPYKCPICSKGFRDNSHMVKHKRIHSSERPYKCKDCNKSFAVSYNLSVHRRTHLKQQKLNCIVCGKVFENRSLLNLHRINENHHDEDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01397759;
90% Identity: -
80% Identity: -