Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000001.1:4290243-4291931[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00014 0.014 16.8 2.0 2 23 258 280 257 280 0.95

2 8 4.9e-05 0.0048 18.3 3.4 2 23 288 309 287 310 0.95

3 8 0.00011 0.01 17.2 0.6 1 23 329 352 329 352 0.96

4 8 2.1e-05 0.0021 19.4 0.6 1 23 371 393 371 393 0.96

5 8 2.2e-05 0.0022 19.4 1.7 1 23 399 421 399 421 0.99

6 8 2.9e-07 2.9e-05 25.3 0.8 1 23 427 449 427 449 0.98

7 8 4.3e-06 0.00042 21.6 4.0 1 23 455 477 455 477 0.99

8 8 0.0012 0.12 13.9 3.1 1 22 483 504 483 507 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00014	0.014	16.8	2.0	2	23	258	280	257	280	0.95
2	8	4.9e-05	0.0048	18.3	3.4	2	23	288	309	287	310	0.95
3	8	0.00011	0.01	17.2	0.6	1	23	329	352	329	352	0.96
4	8	2.1e-05	0.0021	19.4	0.6	1	23	371	393	371	393	0.96
5	8	2.2e-05	0.0022	19.4	1.7	1	23	399	421	399	421	0.99
6	8	2.9e-07	2.9e-05	25.3	0.8	1	23	427	449	427	449	0.98
7	8	4.3e-06	0.00042	21.6	4.0	1	23	455	477	455	477	0.99
8	8	0.0012	0.12	13.9	3.1	1	22	483	504	483	507	0.91

Sequence Information

Coding Sequence: ATGAGTAAaattagtaatttaaaaaataaatgtcgcACATGTTTGAATGGCTCCAAGGGCTTTCAACTGTTAACAAAAATGATAAgtgaaaagaaagaagaaacgAAATCTTATGGGGAATTTCTAAAGGATCTAACCAATATTGAAATTATGGACGAATTGTATAATGATATGCCTAAAAATATCTGTGCGTGCTGCATACGTAAACTAAAAGCTGCATATGCCTTTGTCCAACAAGCTCTAGAAGTAAATGCTAAGCTTTGGTCTATACTCAATGAAGTGGATAGTATAAATGAAGACAAGCCTACAGACTGCCTGCAGGAAGCCCAGATAGATATACAAAATTGTTTAGAAATCAAAATGGAAGATGAAGAGACGACGGGAATTAATAGGAAAGAACTAGCAAGTATGGATACTGAATTAAAGCTCGAACAGTCGCAAGATGAAAATGTGCTAATTATGAGTACTGACAAATATATGACAATAAATGAAATTCAAGAAACTATTACTGGCGAATCTTCATCAACAAAGCAAAATGAATCAGTGTCTGAGTGTGAAGAGGATAACGAAGCTGATGACATTTTTGATAAAGACTTTCCAAATCATAAGAATCAATTTTGCGACAGCGATGGTGATTCAATATCATCAAATTATTCCGACTGGGCCAAGGAAACTAATACcgctaaaataaaagaaaacaaaatcaaaattaaatccTCAGTTCGATCTAAGAAAGTTAAGGAAAAGGACATTGATGATAATATACCTACGCCGTGTGATCAGTGTGATAGAGTTTTTCCTAATTCTCGTTTACTGAGTCGACATAAACGTCACACACATGTTCCTGAAGAATTGAAAGTACAGTGTCCATATTGCACAGCCAAGTTTGGACGGCGTCATAACATGTATGCACACATGAGAACCCACCACAAAGACAAGCCGATAGAGGAACACATAACACAACAAAGGAAATTCCCTCGTCAATATGCTTGCGAACAATGTGATGGCACTTATACAAGCAAATATTACCTACTGGCTCATATGAAATTAAAACACAACCCTGATACTACTCCAAAAAAACCAGAACGTGTTATATTGCCAAAAAAGCGTTTTCTTTGTACATTGTGTGGCTCCAAATTTGATACACAATCAAACTTAGATGTACACATTAGACGACATACTGGCGAAAAACCTTATAAATGCGATCTTTGTGATAGAGCCTTTTATAGGCCTTGTGATGTACAAGCACATCGTCGTTCACATACTGGAGAAAAACCGTTCATTTGTAAAGTATGTGAAAAAGCTTTTGCCAGatcaaataaattgaaaattcatATGCGAACACATTCCAATGAGCGTCCCTACAAGTGCAAGCAGTGCGAAAAAGCTTTTAAACATTCAAAAGACTTAAACATACATAAGCGCATACATACAGGAGAAAGGCCCTACACGTGCGGCGTGTGCCACAGCACATTCACACAAAGCAATTCGTTAAAACTGCATCAAACAAAACagcaacattttgaaataatcgatCCAGTAGTCTCCTGTTGA
Protein Sequence: MSKISNLKNKCRTCLNGSKGFQLLTKMISEKKEETKSYGEFLKDLTNIEIMDELYNDMPKNICACCIRKLKAAYAFVQQALEVNAKLWSILNEVDSINEDKPTDCLQEAQIDIQNCLEIKMEDEETTGINRKELASMDTELKLEQSQDENVLIMSTDKYMTINEIQETITGESSSTKQNESVSECEEDNEADDIFDKDFPNHKNQFCDSDGDSISSNYSDWAKETNTAKIKENKIKIKSSVRSKKVKEKDIDDNIPTPCDQCDRVFPNSRLLSRHKRHTHVPEELKVQCPYCTAKFGRRHNMYAHMRTHHKDKPIEEHITQQRKFPRQYACEQCDGTYTSKYYLLAHMKLKHNPDTTPKKPERVILPKKRFLCTLCGSKFDTQSNLDVHIRRHTGEKPYKCDLCDRAFYRPCDVQAHRRSHTGEKPFICKVCEKAFARSNKLKIHMRTHSNERPYKCKQCEKAFKHSKDLNIHKRIHTGERPYTCGVCHSTFTQSNSLKLHQTKQQHFEIIDPVVSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01397768; iTF_00760354; iTF_01398806; iTF_01399728; iTF_00742176;
90% Identity: iTF_01398806;
80% Identity: -