Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000117.1:2017594-2019459[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00019 0.018 16.4 3.7 1 23 6 29 6 29 0.97

2 12 3.8e-06 0.00037 21.8 3.5 1 23 35 58 35 58 0.96

3 12 0.00033 0.033 15.6 3.1 2 23 178 199 177 199 0.97

4 12 0.0036 0.35 12.4 1.0 1 23 205 227 205 227 0.93

5 12 0.0008 0.079 14.4 0.0 1 22 240 261 240 261 0.96

6 12 0.0026 0.26 12.8 3.4 1 20 269 288 269 289 0.95

7 12 0.028 2.8 9.6 1.3 1 23 317 339 317 339 0.97

8 12 0.00038 0.037 15.5 9.4 1 23 372 394 372 394 0.99

9 12 0.00016 0.016 16.6 8.1 1 23 455 478 455 478 0.96

10 12 0.00036 0.035 15.6 3.2 1 23 484 506 484 506 0.98

11 12 1.4e-05 0.0014 20.0 0.7 2 23 514 535 513 535 0.97

12 12 0.036 3.5 9.3 6.0 1 23 541 564 541 564 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00019	0.018	16.4	3.7	1	23	6	29	6	29	0.97
2	12	3.8e-06	0.00037	21.8	3.5	1	23	35	58	35	58	0.96
3	12	0.00033	0.033	15.6	3.1	2	23	178	199	177	199	0.97
4	12	0.0036	0.35	12.4	1.0	1	23	205	227	205	227	0.93
5	12	0.0008	0.079	14.4	0.0	1	22	240	261	240	261	0.96
6	12	0.0026	0.26	12.8	3.4	1	20	269	288	269	289	0.95
7	12	0.028	2.8	9.6	1.3	1	23	317	339	317	339	0.97
8	12	0.00038	0.037	15.5	9.4	1	23	372	394	372	394	0.99
9	12	0.00016	0.016	16.6	8.1	1	23	455	478	455	478	0.96
10	12	0.00036	0.035	15.6	3.2	1	23	484	506	484	506	0.98
11	12	1.4e-05	0.0014	20.0	0.7	2	23	514	535	513	535	0.97
12	12	0.036	3.5	9.3	6.0	1	23	541	564	541	564	0.96

Sequence Information

Coding Sequence: ATGGAAGACAATGCTTTTAAATGTGAACTTTGTTGCACAGTTTTTTCACGAAAATCTTCACTTAATCGCCATGTAAGAGAACAACATCTACAACCAAAGTATTACCATTGCAAGCAATGTGGATACAGattttctaaaaaatataatcttcAAGTACATATACAAAATGTACATTCAAAAAATTGTAAGGGAATGGATTGCCCAAGTGATTTTGAGAAATTAGCAACATTAAAGAAACGGAAGCCAGAAGCCTATAAAGCAACTGTTTCTTCAAGTACGTCATTGCAATTAGATGAAGAAGCCGATGCGAAAGCTTTGGCGGAGTCTGTATTAAAGGAACTTAAACAATTGCAAAGAGATATTCAAGCATCAGAAAACATTTTGCCTGAAAATTCTGGACTACATGAATATAGTAACATAGAAACGAGCACGTTGGAAGTTATTAATATTAGAGATAATTTATATCCATTGGGGAACTTCACTCTAGTAAAAACAGAAATAACAAAACGTGCAGATGGAGCACTGTATTTGAGGTGTGAGTTTTGTAGTAAAGAATTTAAGAAGACTTACAACTATTTAAGacATCGAAGAATTCATACTAAAGTGAGaccttttgtatgtattttatgtaaaaaatcctTTCCAACTACGGCCCaactaaaaacacatttttcaatGCACAAATTAGATGAGAAATTCGGAGTATttcataaattatataaatgtcCGGAATGCGGGGAAGGCTTCAATGCCGTACAACAGTTAGACAAACATTTAagATCAATATCATCTTGTAACGTAACATTCGAATGTCCACATTGCTTAAAATCCTATAAAACATTGAAAACGCTCTTGCGTCATAAGCATTTTGAAAAAGATGGCGatttagaaatattaaaaaaactgttACCTAGCCCTATACCTTTATtcgaagatttaaaaaaatttcatgaatgtAATTTTTGTGGAATACACGTAAATGATATTACTCTATTAAACCAGCATGTGCTGCGacatgaaaatttgtttaagaaatgtAGTAAATTCCAATGTTCGTTTATACCTAAATCGGATGTAAAGATTCAAACTAAAGTTCCTATAAGTATTAGACATTTTAAATGCCCATATTGTAATAAGTGCTTTAAAAGGACCCAAAGTTGTCGTAGACATATGTTAACTCATATAAAGCAGTTGCTAAAACCTCGCGAAATATTACAATATCAAACGAATACCTTGGCACTATATCCAACTATTATAGGAAACGGGGAAAAGGGTTACATAAAAGTTACTACATCTATAATAAAATCAAGCAAAAAGCACAAAACAAAATTGGAAACAAATAGTGCAAGGAAAGAACTTAAGTATAAATGTTCAAAATGTGAAAAATCCTTTTGTTATAAATCCTGgttgaaaaaacattttaaatacaaacacTGCGAAGAAAAGCCTTTTGAGTGCAGTAactgctttaaaaaatttcggACGAAACAGTCTTTTGAGTATCATCTTTTAGTTCATTCTACGGATCGCACTAAAACAACCTGTCAAGTATGTGGTAAACAGTATGCCTCTAGCAAATCCTTAAAGCTGCACTTAAGAATACACACACAGGAAAAACCATTTAAATGCAATAATTGTTGTAAGCTTTTTCGGACTTCTGGTCATCTAATACAGCATCGTAAAGCGAATCACAAAGAATAA
Protein Sequence: MEDNAFKCELCCTVFSRKSSLNRHVREQHLQPKYYHCKQCGYRFSKKYNLQVHIQNVHSKNCKGMDCPSDFEKLATLKKRKPEAYKATVSSSTSLQLDEEADAKALAESVLKELKQLQRDIQASENILPENSGLHEYSNIETSTLEVINIRDNLYPLGNFTLVKTEITKRADGALYLRCEFCSKEFKKTYNYLRHRRIHTKVRPFVCILCKKSFPTTAQLKTHFSMHKLDEKFGVFHKLYKCPECGEGFNAVQQLDKHLRSISSCNVTFECPHCLKSYKTLKTLLRHKHFEKDGDLEILKKLLPSPIPLFEDLKKFHECNFCGIHVNDITLLNQHVLRHENLFKKCSKFQCSFIPKSDVKIQTKVPISIRHFKCPYCNKCFKRTQSCRRHMLTHIKQLLKPREILQYQTNTLALYPTIIGNGEKGYIKVTTSIIKSSKKHKTKLETNSARKELKYKCSKCEKSFCYKSWLKKHFKYKHCEEKPFECSNCFKKFRTKQSFEYHLLVHSTDRTKTTCQVCGKQYASSKSLKLHLRIHTQEKPFKCNNCCKLFRTSGHLIQHRKANHKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399735;
90% Identity: -
80% Identity: -