Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000138.1:4285091-4292104[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.9e-05 0.0068 17.8 4.2 1 23 205 227 205 227 0.97

2 10 3.3e-05 0.0033 18.8 0.3 1 23 237 259 237 259 0.96

3 10 4.3e-06 0.00042 21.6 1.6 1 23 266 288 266 288 0.99

4 10 7e-05 0.0069 17.8 0.4 2 23 294 315 293 315 0.96

5 10 3.1e-05 0.003 18.9 1.3 1 23 324 346 324 346 0.98

6 10 7e-06 0.00068 20.9 1.3 2 23 354 375 353 375 0.97

7 10 9.8e-07 9.6e-05 23.6 1.5 2 23 381 402 380 402 0.96

8 10 3.1e-06 0.00031 22.0 1.5 1 23 408 430 408 430 0.98

9 10 0.0024 0.24 12.9 0.3 2 23 436 457 435 457 0.96

10 10 0.00032 0.031 15.7 1.1 1 23 462 485 462 485 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.9e-05	0.0068	17.8	4.2	1	23	205	227	205	227	0.97
2	10	3.3e-05	0.0033	18.8	0.3	1	23	237	259	237	259	0.96
3	10	4.3e-06	0.00042	21.6	1.6	1	23	266	288	266	288	0.99
4	10	7e-05	0.0069	17.8	0.4	2	23	294	315	293	315	0.96
5	10	3.1e-05	0.003	18.9	1.3	1	23	324	346	324	346	0.98
6	10	7e-06	0.00068	20.9	1.3	2	23	354	375	353	375	0.97
7	10	9.8e-07	9.6e-05	23.6	1.5	2	23	381	402	380	402	0.96
8	10	3.1e-06	0.00031	22.0	1.5	1	23	408	430	408	430	0.98
9	10	0.0024	0.24	12.9	0.3	2	23	436	457	435	457	0.96
10	10	0.00032	0.031	15.7	1.1	1	23	462	485	462	485	0.96

Sequence Information

Coding Sequence: ATGGAGAGCGTTCCTCCAACTTGTCGCATTTGCTTAAATTCCTCCAACGATTACATTGATTTTCAAACACTTTTTGAATCCGACGAGGAGGATGAAATAACTCCAGAAAACATTACACATGAATTCAATTACTTGCAATGTTTGCGTTTGTGTACAAATTTGCCTATTCAGGAGGACGATGAAGGACCCCAGTGCTTATGTGCGGAATGTGGAGTCGAACTTCAGATTGTTTATAAATTCTTACAAAAAGCAACAAGGTCACATGCCATATTGGAAAGTAGTTTTAATAAAGAAACAATTGAAAACGTAGAAATTTCTATAGAAACGATTGACAGCGCTGAGACTGAAAATGATGATTTCCAAGATTTAGATAAGGCGCAATATTTAAATGATTATATTGATCTATCTAATGATTGCACTGAGATCGCAAATGAAGGCGAATCATTAAACGAGTTCTTTGACGAAGATGATACCTTAGACGGTGGAGTTTCTAATACCGAGGACACTGTCATAAAtgAGAACGAACCAAATGAGCCTTTGCATGAAATCGAACGTTTGGCGGTAGAGAACGAAACTGCACAGAAGAATGCGTACATTTTTGcacccaaaaaatataaatgtcatATTTGCAATCGTTCCTACATCACAGAgaatcatttaaaaattcatttagatTATCATAAACGAAGGAATGTGGGAAGTAAACCGTACAGCTGTAAAATATGTGGCGAATCTTTTGCTTTGAAGCGTTATTTGACACAACATGTGATTGAACATCAAGATTGTCGGGAGATATACAAATGTCAATATTGCGACAAGgaATACGTTTCTAAAACTGCCTTAACTAGTCATAAACGCATTCACCAAGGAGAAACATTAAATTGCAATGAATGTGGAAAGCAATTTAGTGGCACTTATGAATTAAGTGTTCATCTGAGATTTCATAGGCGCGAAAAGGCCAAAGCATTATATACGTGTGAAATATGTGATAAAGAATATTCCTCGCAACGCTGCCTATCCCTACATATGGTCGTACATTTCACCAACCGGGAACCACTCAAATGTGATTATTGCAATaagGAATACGTTTCGAAATCTGCCCTCAAGAACCACAAGCGCCTACATGAAGGGCAGACTATAGAGTGCAATATATGCGGAAAACAGTTTACACGCAATTGCGAACTCGAAATACACATGCGATTCCACACACATGAACAGCCCTTCAAGTGTACAGTGTGCGAAAAAGCATTTACAATAAAGGGCCACTTAAAGGCACACATGCTTCAACATGatggtattaaaataaaatgtgatgAATGTGGCAAATTGTTTGGTTCTACAAAGGCTTTAAATGAACACTCATATACACATAGTGAAATGCCATACCCTTGCGAGTTTTGCGACAAATCCTACCCTTCAAAACAAAAATACAAACTACATCTTGAAAGGTTGCATTTGAGCAAGAGAAATGAAATTGATGCATCCCAAATTGACAGCTTgacaaatatgaaaatttttaatagacgaaaaaaatttacatatgtcaaGATTATAACGAAAGAAGGAGAAGGTATTGATCGGCAAGAGATAGAATAA
Protein Sequence: MESVPPTCRICLNSSNDYIDFQTLFESDEEDEITPENITHEFNYLQCLRLCTNLPIQEDDEGPQCLCAECGVELQIVYKFLQKATRSHAILESSFNKETIENVEISIETIDSAETENDDFQDLDKAQYLNDYIDLSNDCTEIANEGESLNEFFDEDDTLDGGVSNTEDTVINENEPNEPLHEIERLAVENETAQKNAYIFAPKKYKCHICNRSYITENHLKIHLDYHKRRNVGSKPYSCKICGESFALKRYLTQHVIEHQDCREIYKCQYCDKEYVSKTALTSHKRIHQGETLNCNECGKQFSGTYELSVHLRFHRREKAKALYTCEICDKEYSSQRCLSLHMVVHFTNREPLKCDYCNKEYVSKSALKNHKRLHEGQTIECNICGKQFTRNCELEIHMRFHTHEQPFKCTVCEKAFTIKGHLKAHMLQHDGIKIKCDECGKLFGSTKALNEHSYTHSEMPYPCEFCDKSYPSKQKYKLHLERLHLSKRNEIDASQIDSLTNMKIFNRRKKFTYVKIITKEGEGIDRQEIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01398765;
90% Identity: iTF_01398765;
80% Identity: -