Nfer015079.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000112.1:43342-55883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.52 51 5.6 0.1 2 23 260 282 259 282 0.93 2 16 1.1 1.1e+02 4.6 0.3 6 23 291 308 291 308 0.96 3 16 5.7e-06 0.00056 21.2 2.5 1 23 314 337 314 337 0.98 4 16 9.9e-06 0.00098 20.5 0.9 2 23 343 364 343 364 0.98 5 16 1.1e-06 0.00011 23.5 0.5 2 23 370 392 369 392 0.96 6 16 0.88 86 4.9 1.5 3 23 398 417 396 417 0.90 7 16 0.36 35 6.1 0.3 2 23 704 726 703 726 0.95 8 16 0.036 3.5 9.3 0.0 6 23 735 752 735 752 0.99 9 16 0.016 1.6 10.3 7.6 2 23 759 781 758 781 0.95 10 16 0.00022 0.022 16.2 1.1 3 23 788 808 787 808 0.98 11 16 5e-05 0.0049 18.2 3.2 2 23 815 837 815 837 0.94 12 16 1.2 1.2e+02 4.5 0.3 3 23 843 862 841 862 0.86 13 16 0.00027 0.026 16.0 2.6 2 23 871 893 870 893 0.95 14 16 1.2e-05 0.0011 20.2 1.0 1 23 902 925 902 925 0.98 15 16 1.3e-05 0.0013 20.0 0.5 2 23 932 953 932 953 0.98 16 16 0.00058 0.057 14.9 1.5 1 22 959 980 959 980 0.96
Sequence Information
- Coding Sequence
- ATGAATTGCCTTTTGTGCTTAGAAGTaactgaaaattataaaaatttcatagtttTTAACTCCAGCTTATGGCAGGAACTAAACATAGAGTATGTTATTGAAAAGCATCTTTGGAAATTGGAAGTTTTAAATGATCAATCCTATATATGCCAAGCGTGTTGGCAAGAATTATACAATTTCCATAAGTTTTATTCAAAACTTGAAAAAGCCCGTTCAAATTTGAATGATTTATTTAACACTGTAGAAGTTACCAAAGAAGCTGTTGAAACAGAAAACGAAGAACCTGaacttgaaatgttgatttttaaaGAGGAATATTCTACAGATATATTTGAAGAGGAATATGTGGAGGAAGCTAATTATCCTAAAACTAATAGCAAGCGTAAATGCTCtagaaagaaaagtaaaaatgaTAACAAAATTATTGCAAGAAAAAGTTCGAGGAAAAGATACAGCAAAGACAAaagtaaaattgaaattgaaataaaaagacTGACATCCGATAAAAGTCCAGATGAAATTGACGAATCGTTAGAAGTTGAAAGAATAGAAAAAAACGCTATAGAAAGTATTTCATTCGATGAAAATATAGATGAACTTAAAACagaattagaattaaaaacaacagaaaatgacGCTAAACAAATCAAAATGGAAGAAGACGATCAGAGTGATAGTTCCACAAATGACGATGATACTTCCTCCGATGAGGCGGATTcagatcaattaaataaattatcggATGAAGACAAATTCAtagccgaaaattttcaaatcacttGTGACATTTGTCAAATCCCACTGGATACATTTTCCGCAATGCTCAAACATTACAAAGACGAACACAATCAGCGAGGGTATGTTTCTTGTTGTAACGCTAACTTTTTCCGGCGTGTTCAATTAATGGATCATATCAACTTTCACCAAAATCCTGAATGTTTTAAATGCAAACACTGTAACAAAGTATTCCCTAAACGCGCAGGGCTAAAGAGTCATATACAGAAAGTTCATGAGGCAGAGGTTGCTAAATGTGACATTTGTTTCAAAATGTTTACAAATGCATGGGGTCTAAAAAAACACATGAAACTACACAAAACTGAAGATATATCTTGTGAAAAATGTGGTAAATCctATACATCTAAATACTCCCTAGACAATCACATGAGAGTTGTTCACTTTAGAAATATAATTTGTCATTTATGTGGCAAATCTGTTATATTACCCGTATTAAAACGTCATATGGCACGGCATGAAGGAAAAGCTCCACCGAAGGAAGTTTTAAATAGTCAATCCTATATATGCCACGGGTGTTGGCAAGAATTATACAGCTTCCATaagttttacttaaaacttGAAAAAGCCCGCTCAAATTTAAATGGTTTATTAAACACTGAAGAAGTTAGCAAAGAAGCTGTTGAAACAGGAAACGGAGAAAAAACTGAGAAAATTGTTAATATTATTGCAAAAGTAGCACTACCTGAAcctgaaattttatttcttaaagagGAATATCctacagatatttttgaaaaggaAGATGAAGTGGAAGTAAGTTATCTTAAAACTAATAGCAAGCGTAAATGCTCTAGGACGAAAAGTTCACAAAGTAAAAATAGTTCGAGGAAAAAATCCTCGAACGATAAGATAAACGAAGTAAAATCCAACGGAAATCCACATGAAATTGGTAGAAAATTTGAAATAGAAAGAACAGAAAACGACAAGTTCGATGAAAATGGAGCTGAAATTGATTCAGAACTAAAAACAGTAGAAAATGATGCTGATGTCAACAAAATGGAAGATGATTTAGAATCTAATGATAACAAAATTATTGCAAGAAAAAGTTCGAGGCAAAGATCCAATAAAGATAAAAGTGATACTGAAATCAAAGAATTAAAGTTGATTGAAAATCTAGATGAAATTGACAAAAAGTTAGAAAACAGAATGAAATTCGATGAAAATGTAGATGAACTTGAAAcaaaattagaattaaaaacaacagaaaatgacgctaaacaaaacaaaatggaaaaagACGATCAGAATGATAGTTCCACAAAGTTAAACAACTTATCTAATGTAGACAAATTCGTAgccgaaaattttcaactcACTTGTGACATTTGTAAAATCTCAATGGATACATTTTCCGCAATGGCCAAACATTACAGAGAGACACACAATCAGCGTGGGTATGTTAAGTGCTGCGGTATTAAGTTTATAACTCGTGTTGAATTAATCGATCATATTAATATCCACCAAAACCCCGAATATTTGAAATGCAAATACTGTACCAAAACGTTTGCTAAACGTACATGCCTGAAGCTACATACAAAACATGTTCATGAGGAAAAGCGGGTGGATTGTGACATTTGTGGCAAAAGTTTAGTAACTGAATTATGTTTAAAAAGGCACATGCTTACACATAATCCTCAAGAGAAAAGATCTTGCAAACAATGCGGTAAATCCTATTCATCTAAACACTCCCTATACAACCACATGCAATTTGTTcacgttaaaaatataatttgccatTTATGTGGCAAATCTATCATAATATACGACTTCGCACGTCATATGGCACAGCATGAAGGAAAACCTCTACCGAAGGTAAGCTGTACAATGTGCGATCGCCAGTTTTCAGATAATAGATGTTTAAATCGACACGTGCGGGCGCGTCATCCACCGGAAGGAGCTataactgaatttaaatgtgatAAGTGCCCAAAAGTGTTTTCAGCTGTTCATAGTCTTAAAACGCACATTAGAGTAGTGCACGATAATGCATATGTAAGGAAGTGTACATTGTGTGATAAAACATTTAAAGGACCCGGCGCCCTAAgggagCATATGTCAAGGCATAAGGGTGAACCCTTATACGTTTGCGGCTTTTGtcctagaaaattttattccagTGGAAACTTGCACACTCATCGCAAAACATGTTCCGGAAATCGAAAAGAAACATGTGTAGCGAAAAGAACAGAAGATGAATAA
- Protein Sequence
- MNCLLCLEVTENYKNFIVFNSSLWQELNIEYVIEKHLWKLEVLNDQSYICQACWQELYNFHKFYSKLEKARSNLNDLFNTVEVTKEAVETENEEPELEMLIFKEEYSTDIFEEEYVEEANYPKTNSKRKCSRKKSKNDNKIIARKSSRKRYSKDKSKIEIEIKRLTSDKSPDEIDESLEVERIEKNAIESISFDENIDELKTELELKTTENDAKQIKMEEDDQSDSSTNDDDTSSDEADSDQLNKLSDEDKFIAENFQITCDICQIPLDTFSAMLKHYKDEHNQRGYVSCCNANFFRRVQLMDHINFHQNPECFKCKHCNKVFPKRAGLKSHIQKVHEAEVAKCDICFKMFTNAWGLKKHMKLHKTEDISCEKCGKSYTSKYSLDNHMRVVHFRNIICHLCGKSVILPVLKRHMARHEGKAPPKEVLNSQSYICHGCWQELYSFHKFYLKLEKARSNLNGLLNTEEVSKEAVETGNGEKTEKIVNIIAKVALPEPEILFLKEEYPTDIFEKEDEVEVSYLKTNSKRKCSRTKSSQSKNSSRKKSSNDKINEVKSNGNPHEIGRKFEIERTENDKFDENGAEIDSELKTVENDADVNKMEDDLESNDNKIIARKSSRQRSNKDKSDTEIKELKLIENLDEIDKKLENRMKFDENVDELETKLELKTTENDAKQNKMEKDDQNDSSTKLNNLSNVDKFVAENFQLTCDICKISMDTFSAMAKHYRETHNQRGYVKCCGIKFITRVELIDHINIHQNPEYLKCKYCTKTFAKRTCLKLHTKHVHEEKRVDCDICGKSLVTELCLKRHMLTHNPQEKRSCKQCGKSYSSKHSLYNHMQFVHVKNIICHLCGKSIIIYDFARHMAQHEGKPLPKVSCTMCDRQFSDNRCLNRHVRARHPPEGAITEFKCDKCPKVFSAVHSLKTHIRVVHDNAYVRKCTLCDKTFKGPGALREHMSRHKGEPLYVCGFCPRKFYSSGNLHTHRKTCSGNRKETCVAKRTEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -