Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000027.1:5121951-5129174[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.88 87 4.9 1.5 1 23 231 254 231 254 0.96

2 18 0.03 3 9.5 2.6 2 23 262 283 261 283 0.97

3 18 0.007 0.69 11.5 0.2 2 20 343 361 342 364 0.94

4 18 0.00015 0.014 16.8 1.3 1 23 437 460 437 460 0.94

5 18 0.0013 0.13 13.7 1.1 1 22 467 488 467 488 0.96

6 18 0.00067 0.066 14.7 1.4 2 23 561 582 560 582 0.94

7 18 0.0084 0.82 11.2 0.2 2 20 609 627 608 629 0.92

8 18 0.0036 0.36 12.4 6.8 1 23 680 703 680 703 0.97

9 18 0.013 1.2 10.7 0.9 1 23 740 763 740 763 0.96

10 18 0.4 40 6.0 1.5 2 23 818 838 816 838 0.91

11 18 2.5e-06 0.00025 22.3 1.3 1 23 844 866 844 866 0.98

12 18 0.00011 0.011 17.2 1.5 1 23 872 894 872 894 0.98

13 18 0.0017 0.16 13.5 4.4 1 21 900 920 900 922 0.96

14 18 9.7e-05 0.0095 17.3 0.2 3 23 948 968 947 968 0.99

15 18 2.7e-06 0.00027 22.2 2.3 1 23 974 996 974 996 0.99

16 18 7.4e-07 7.3e-05 24.0 3.3 1 23 1002 1024 1002 1024 0.99

17 18 5.1e-05 0.005 18.2 2.0 1 23 1030 1052 1030 1052 0.96

18 18 0.029 2.9 9.5 2.2 1 21 1058 1078 1058 1082 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.88	87	4.9	1.5	1	23	231	254	231	254	0.96
2	18	0.03	3	9.5	2.6	2	23	262	283	261	283	0.97
3	18	0.007	0.69	11.5	0.2	2	20	343	361	342	364	0.94
4	18	0.00015	0.014	16.8	1.3	1	23	437	460	437	460	0.94
5	18	0.0013	0.13	13.7	1.1	1	22	467	488	467	488	0.96
6	18	0.00067	0.066	14.7	1.4	2	23	561	582	560	582	0.94
7	18	0.0084	0.82	11.2	0.2	2	20	609	627	608	629	0.92
8	18	0.0036	0.36	12.4	6.8	1	23	680	703	680	703	0.97
9	18	0.013	1.2	10.7	0.9	1	23	740	763	740	763	0.96
10	18	0.4	40	6.0	1.5	2	23	818	838	816	838	0.91
11	18	2.5e-06	0.00025	22.3	1.3	1	23	844	866	844	866	0.98
12	18	0.00011	0.011	17.2	1.5	1	23	872	894	872	894	0.98
13	18	0.0017	0.16	13.5	4.4	1	21	900	920	900	922	0.96
14	18	9.7e-05	0.0095	17.3	0.2	3	23	948	968	947	968	0.99
15	18	2.7e-06	0.00027	22.2	2.3	1	23	974	996	974	996	0.99
16	18	7.4e-07	7.3e-05	24.0	3.3	1	23	1002	1024	1002	1024	0.99
17	18	5.1e-05	0.005	18.2	2.0	1	23	1030	1052	1030	1052	0.96
18	18	0.029	2.9	9.5	2.2	1	21	1058	1078	1058	1082	0.89

Sequence Information

Coding Sequence: ATGGCAGTAGAACTATTGATGATAGAAGAAGCAATAAAATTCGGAAGGGAATCTGGTATTAGCAAAATAGCCATACTAACGGATAGCAGAAGTGGGGCAATGGCCCTCCGGGGGAACAGGCCAAACGAAATTTGCGCTAGGATACATAATGAACTGAAAAAGAGTACAATCATATCAAGCGTAGAAATTCATTACATACCGCCGCATATGGGCATTGCAGAAAATAAGCTTGTAGACGCGGAGGCAAAGAAAGCATTAGAAGATGGTGTACAATTAGAATGCAAATGGATAAAAGCAGAAGCAATTAGACAGATGGAGAATATTCTATGGAAGGAATGGGAAAGGGAATACAACCTGATAAGCCGCGCAAAGGGACGTGAATATGCGAGGATCTTCCCATCGATGCGAATGAGGCCTTGGTTTTCGAACTTGACAACGAAGCTAGAACCAGTACAAGTCAGGCAACTGAATATAATCTTATCAGGTCACTCTTTGGGCCCATATACTTTAAGTAGATTACATGTCTTGGAGGATGACCAATGCGATTTTTGCGGGGAGACTGAAGATGACTCGcacataattttcaaatgtgTAAGgcTATCATCTTCCAGAGCAAGTGAACATCACCTGCCCACTAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAAAAGTACCTGCCAACAAATATAAATGCGAATTGTGCGCGAAAGATTATTTGTACAAACATCAAGTGTTTGCTCATTTGAGAGAGGATCATTTGAACGAAGACATTCCTTTGAAATGCAGCCATTGCAATCTGGAATTTATatcaataaaaatgtatgaacaaCATAAACAAACCCACTGCCTGTCTAAACATAAACTATTGCTTTGTCCCAATTGCAATGGCAAGTTTGTCTGGCtcgtaaatatgaaaaaacacAATTGTGTTACGAAAATATTGGATATTGAAAAAACTCTTAATGTTAAAGTAAATGAGAGTTGCTATGATGAAATGCgttcatcgccaaaaactatCATAAGATGTGGCCTTTGTGATATGACCTTTGAAAAACTGCGCGATTTACGACAGCACATGCCCTTGCACGCCGATGGCAAAACTGGAGTTGACTTTAATGGTTGTATTTATGTAAACCAATTTGAAAATGTATCCAGCAATCGCGAATTGTTGGAacagaatattaaaaattcatttacaaaacGTCAAATAAGTCTGTTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAGATGATGCTGATGAAGAAAAAAGCTATGTGTGTGAGCTTTGCAATGAAACGtttaaaaaacgaaaacttCTGTTTAAACATCAAGCTGAACAACACACGAATGTTTCAATGCCTTTCACTTGCAAGAAATGTAAGATGCAATATGTTAGTTTGGATTTGTTACAACAACATATGAAAAGAGAATGTTGGAATGAACATCGACTAGTTTCTGAACAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGATAATATGCTGAGACATAGAGAAATACAGcgATTCATAAATAGTGACAATTCGCTAACGGATAACTTGTGTCGTACCCAATCACAGAAAGCAATTGCTTCATCAATCTCCAGCTCTGATGTGACAAGTGCCAATATccaaatttgttattgtttcttaTGTCCTAAAACTTTCGCCAATAATGATCAGTTCAATGATCATTTGATCGGTCATGGTCTCACACCATCCAACATCAAAATTGTTGCAAGCACAATACATTCTGTATGGTGGCCAAACGGCAAAAAgctaataaaatgcaaaatatgtgaccaagttttttttagtacGGCCGaattaaatgaacatttttcTTCTAACACTTCCAAAAACTTGTGTGGTGGAGGGCAACATTCAGTGGCAAATTACTCGATTACAAATCAAATGGGGTTTGAGTTACATTTAGAGCTGGACTCGGAAACGGAAACTGAAAGCATCGAAaatgaagaaaatgaaaatatattgccATATAAATGTTGCATGTGTACTAAATCATTTAagcgaaaatttcaaataactcAGCATCAAACATCGATGCATAACTATGAATTGTTGGAACTCAAATGCGAACGTTGCTTTTTTAGAACTGTATCACAGAAAGTTTTAGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTGTAATTTCAAATTTATGTGGCAAGAAAACCTTGAAAAGCATGTTTCGATATTTCATACTTCGGACGTTTTCGTCAAAGCACTGCATGCGGCTAGCACAATGAGCAATACTAATGCTCAATGCCTTGAATCAGAAGAAGCTTTCCAGAATGATTTGTCGTTATCATTACATCAGAACGATTCAGATGCAAGGGACTGCATTGAGTCTAAAGATAAATGTAAATGTCTCATTTGTGGAATTTACATTACCAAAAATAATTATGCAGAACATATTAGGAGAcacaaatgtgacaaatcttacAAATGTGATTTTTGCGAAAAGGCCTTTATAACAAATTCGTCATTAAAGAAACATCAGGTCATGCATATGGTAGAACGTACTTTCAAATGTACTTTATGCTTGAAATCGTTCAAGCGGCAAGACGGTCTAGATGTCCATAAACGTTTACACACCGAAAAAATACCATACAAATGCACAATTTGTTTGAAATCATTTCTACGATCTGCACATCTGACTGCTCATATGCGATGTCATCCGCGTGAAAAGGCAACGCCAGACAAGAAGTCTAACTCATCTGATTGTACTCAAGGGGAGAGAAAGACGAAGTTATGCCCTATTTGTGGTGTCAATTTGTCATACAAAACAGATCTTACAACACATATGAGAAGCCATACGGACGAGAGGCCATTCAAGTGCGATCTTTGCGATAAAAGATTTAACAGATTAACAGATTTAAATCTTCATCGACGCACGCACTTTACTGAACGTCCATTTAAATGTAAAACTTGCGAGAAATCTTTTGTCCATAGAGGCAAATTAGAAGCTCACATGCGCACTCACACTGGCGAGCGTCCATATCAGTGCACAGTTtgtcacaaaaaatttataaattgggGCACTTTGAAGGAGCATTCGCTTAATCATACTGGTAATAAGCCCTTTATATGTGAGATTTGCAATCGAGCCTTTAAATGTTCTTGGTATCTCAAAAAGCATCGTGTCAAAAGTGGCCATCATGCAGTAAATAATTGA
Protein Sequence: MAVELLMIEEAIKFGRESGISKIAILTDSRSGAMALRGNRPNEICARIHNELKKSTIISSVEIHYIPPHMGIAENKLVDAEAKKALEDGVQLECKWIKAEAIRQMENILWKEWEREYNLISRAKGREYARIFPSMRMRPWFSNLTTKLEPVQVRQLNIILSGHSLGPYTLSRLHVLEDDQCDFCGETEDDSHIIFKCVRLSSSRASEHHLPTSDTDAEDLEEETKVPANKYKCELCAKDYLYKHQVFAHLREDHLNEDIPLKCSHCNLEFISIKMYEQHKQTHCLSKHKLLLCPNCNGKFVWLVNMKKHNCVTKILDIEKTLNVKVNESCYDEMRSSPKTIIRCGLCDMTFEKLRDLRQHMPLHADGKTGVDFNGCIYVNQFENVSSNRELLEQNIKNSFTKRQISLLYQAIDKDGKEMDISDSDSDEDDADEEKSYVCELCNETFKKRKLLFKHQAEQHTNVSMPFTCKKCKMQYVSLDLLQQHMKRECWNEHRLVSEQCDCCKERFIWPDNMLRHREIQRFINSDNSLTDNLCRTQSQKAIASSISSSDVTSANIQICYCFLCPKTFANNDQFNDHLIGHGLTPSNIKIVASTIHSVWWPNGKKLIKCKICDQVFFSTAELNEHFSSNTSKNLCGGGQHSVANYSITNQMGFELHLELDSETETESIENEENENILPYKCCMCTKSFKRKFQITQHQTSMHNYELLELKCERCFFRTVSQKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQENLEKHVSIFHTSDVFVKALHAASTMSNTNAQCLESEEAFQNDLSLSLHQNDSDARDCIESKDKCKCLICGIYITKNNYAEHIRRHKCDKSYKCDFCEKAFITNSSLKKHQVMHMVERTFKCTLCLKSFKRQDGLDVHKRLHTEKIPYKCTICLKSFLRSAHLTAHMRCHPREKATPDKKSNSSDCTQGERKTKLCPICGVNLSYKTDLTTHMRSHTDERPFKCDLCDKRFNRLTDLNLHRRTHFTERPFKCKTCEKSFVHRGKLEAHMRTHTGERPYQCTVCHKKFINWGTLKEHSLNHTGNKPFICEICNRAFKCSWYLKKHRVKSGHHAVNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -