Nfer003999.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000027.1:5195207-5200421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0049 0.49 12.0 3.3 2 23 138 159 137 159 0.96 2 17 0.023 2.3 9.8 2.9 1 23 236 259 236 259 0.89 3 17 0.015 1.5 10.4 1.3 1 23 266 288 266 288 0.99 4 17 0.0051 0.51 11.9 0.4 2 20 349 367 348 370 0.95 5 17 0.00046 0.046 15.2 0.8 1 23 450 473 450 473 0.95 6 17 0.00048 0.047 15.2 0.5 2 22 481 501 480 501 0.94 7 17 0.49 48 5.7 0.5 2 23 513 535 512 535 0.95 8 17 2.6e-06 0.00026 22.3 0.6 1 23 572 595 572 595 0.96 9 17 0.07 6.9 8.3 1.1 1 23 601 623 601 623 0.98 10 17 6.2e-05 0.0061 18.0 3.5 2 23 630 651 629 651 0.96 11 17 1e-05 0.00099 20.4 2.6 1 23 657 679 657 679 0.98 12 17 0.0035 0.34 12.5 1.2 1 23 685 709 685 709 0.92 13 17 0.0017 0.16 13.5 0.1 3 23 739 759 738 759 0.99 14 17 7e-06 0.00068 20.9 1.5 1 23 765 787 765 787 0.98 15 17 3.9e-07 3.8e-05 24.9 2.5 1 23 793 815 793 815 0.99 16 17 0.0056 0.55 11.8 5.4 1 21 821 841 821 843 0.95 17 17 0.074 7.3 8.3 1.4 1 23 849 873 849 873 0.90
Sequence Information
- Coding Sequence
- ATGATATCGGTACTTGGTTTGTGGAGACCTAAGAtagctataTCAACAAATGCCAGTTTAGACGATGATGGCAACGATAGTGATTTGGAAAATACATCCAGctacTCATCATCAAACGAGAGTTACAACGAAGTTACATCAAGATTATCAGTGCAAGTGGTAGAGGGTCAACAAATTTCTCAAGATGGAGTAATCGAAGAAGTCAACAATAATAGTCGACAAGGAGGTACTACTGTTCGTATTGAAGAATTCATGTGGAACAAGGATTTTCTAGAGGACGTGATTACGTCCTCTAGCAAGGATCTGCTAGAGCCACCTAAATATATAATTGGCGATTCATACAATAGAGAAATACAAACTCTGTTATTTGGGAATCGCCTATACAGTAAACCGAGTAGTTGGCGCCTTGTCGAATGCAAATTGTGCAATAGCACTTTTAAGACATGTAAACAACTGCGTGAGCACTTAGAAAACCATAATGATATGGACACACTTCACAACTTAAAATTGTCGGATAGCAATGTCAAGCATTTGTTTCCAAATATAACCAATTTGAAATCAATCAAGGAAAGTATATGCagagatatttgtaaaaaacaGTGGTTTAAATACTATACGGTATTAAACGAACACTCTTATGAAATGTCCATTAGTGATACAGACGTAGATGAGTTGGAAGAAGAGAGTGAAATGCGTGCCAACAAATACAAATGTTCATTCTGTACAAAAACGTTTTCGTTTAAGTACCAAGTGTTTCCACATTTAAAAGATGCTCATGGCAAGGAAAAAATGCCTTTTAAATGTGGACGATGCAAGTTGGAGTTTGTTTCTATAAAAATGTACATGCAACACTTACAAACTCACTGCcataacaaacataaaaatttactttgtagtcGATGCCCGGCAAAATTCGTTTggccacaaaatataaaaaatcacaaCTGTGTCACAACAAGACCAGCAACCTCTCCGTCTAATCCCGAAGATCAACATAAATCTAATGTCATTGATACTGCCTTTGTACCAAATATCACTGTGATGCGCTGCGCTCTTTGTCCAAAATCTTTTGGGAAATTGAGAGATTTGCGTCAACACATGCCTTTTCATGAAGATGGCAAAACTGGCATTGATTTTCAGAatagtatttatataaaacaacttGAATCTTCGAAAGCAATTAATTATGAAACAGTACAGCGACAGATCCAAAATGATTTTAGAAAACGTCAAATAAGCAATTTCTTCCAAGCTATCGATAAGTATGGAAATGAAATAGAAATTTCAGATTCTGAGTCAGATAGTTGGTCGGATAATAATGCTAATGGTGAAACGGTAGTAACAGAATACAAATGCGACATTTGTAATGCAATTTATAACAGACGAACGTATTTATTAAAGCATCAAGAGGAACGCCACAATAGCGAGGAAATGCCTGTTACTTGTTGGTATTGTGGTCGGAAATTTGTTAACATTCATCTGTTGCAACAGCATTTAAAAAGGGAATGTTGGAATGTAAAGCGAAAAAAAGGTACATCGTGCGAATTTTGTCATGTTCGTTTCATATGGCCCGACAGTCTAGCAATTCATAAAAAGATACAgcATCGTATAAAGACAGAATCATCCGAAATTGAAGGCGTTCTTTCAACTAGCATCACAAAAATACCAAAAGATGTACTAGATAAATCAACAGCTGAACAGCAATCAGAGAACTTTATTTGTTCCTTTTGTGGTGTATCCTTTTCTAACAACTCAAACTTAACGGTACATACGGAGACGCAACACTTGTGCGAAAAAATCTTCAAATGCAGGCTTTGCGAAATGTCATATTTGAAGGCAACCGATTTACAATCTCACCGCCTAACACACCCTGGCGAATATCCTCTTGAATGTATGTTTTGTGAGAAATCGTTTGAACGAAAAAGTcatttaaaattgcataaacgTATACATGATGGCCAAAGAGCGTTTAGCTGTAGTATCTGTCAAAAATCCTTCAAAAAACCTTACCTGCTGAAGAACCATTTCCTAACTCATTCACATGAAAAACCTTTCAAGTGTGACATTTGCagcaaagattttttaaataccaCATATCTGAGGAGACATCAAGAAACGATGGGTCACACCGAGTTGTGGTGGTCAAGGTCAATGAATAATTCCAATCCTGAAGATTTGAAAAATGACACAATGACTGAAAGGAATAGAATTTTATGCCCTATTTGCGGAGTTGGTTTGTCTAGAAATACAAGCATGTCGCAACACATTAAAACTCACACAGGCGACAGACCCCACAAGTGTGACCTTTGCGAAAAGGCATATATACGCAAATCTGATTTAGTAGTTCACCGTCGTACCCACACTGCTGAACGTCCTTTTAAATGTCCGCATTGTGAAAAGGCTTTTCGCAAACGACAGGCATTAACAAAACACATTCGCGTACACACAGGCGAGCGTCCTTACAAGtgtacatattgtcataagGCATTCAGTGTATCGACTCGTTTGAACTTGCATGTGCGTTGTCATACTGGCGATAAACCCTTTAAGTGTGACGTTTGTGGTCAAGCTTATACATGTGGCGCTTATCTAAAAAAACATCGAATCACAAAAGGTCATAatgtggaaaaaaaataa
- Protein Sequence
- MISVLGLWRPKIAISTNASLDDDGNDSDLENTSSYSSSNESYNEVTSRLSVQVVEGQQISQDGVIEEVNNNSRQGGTTVRIEEFMWNKDFLEDVITSSSKDLLEPPKYIIGDSYNREIQTLLFGNRLYSKPSSWRLVECKLCNSTFKTCKQLREHLENHNDMDTLHNLKLSDSNVKHLFPNITNLKSIKESICRDICKKQWFKYYTVLNEHSYEMSISDTDVDELEEESEMRANKYKCSFCTKTFSFKYQVFPHLKDAHGKEKMPFKCGRCKLEFVSIKMYMQHLQTHCHNKHKNLLCSRCPAKFVWPQNIKNHNCVTTRPATSPSNPEDQHKSNVIDTAFVPNITVMRCALCPKSFGKLRDLRQHMPFHEDGKTGIDFQNSIYIKQLESSKAINYETVQRQIQNDFRKRQISNFFQAIDKYGNEIEISDSESDSWSDNNANGETVVTEYKCDICNAIYNRRTYLLKHQEERHNSEEMPVTCWYCGRKFVNIHLLQQHLKRECWNVKRKKGTSCEFCHVRFIWPDSLAIHKKIQHRIKTESSEIEGVLSTSITKIPKDVLDKSTAEQQSENFICSFCGVSFSNNSNLTVHTETQHLCEKIFKCRLCEMSYLKATDLQSHRLTHPGEYPLECMFCEKSFERKSHLKLHKRIHDGQRAFSCSICQKSFKKPYLLKNHFLTHSHEKPFKCDICSKDFLNTTYLRRHQETMGHTELWWSRSMNNSNPEDLKNDTMTERNRILCPICGVGLSRNTSMSQHIKTHTGDRPHKCDLCEKAYIRKSDLVVHRRTHTAERPFKCPHCEKAFRKRQALTKHIRVHTGERPYKCTYCHKAFSVSTRLNLHVRCHTGDKPFKCDVCGQAYTCGAYLKKHRITKGHNVEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01398757;
- 90% Identity
- -
- 80% Identity
- -