Nfer028466.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nowickia ferox
Gene Symbol
-
Assembly
GCA_936446695.1
Location
CAKZFO010000329.1:1034944-1037529[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0003 0.03 15.8 4.8 1 23 178 200 178 200 0.98
2 15 0.00067 0.066 14.7 2.3 1 21 206 226 206 227 0.94
3 15 1.1 1.1e+02 4.5 5.2 1 20 289 308 289 310 0.94
4 15 3.5e-05 0.0034 18.7 3.2 2 23 320 342 319 342 0.96
5 15 0.00068 0.066 14.7 1.3 1 23 422 444 422 444 0.97
6 15 0.0015 0.15 13.6 2.9 1 23 450 472 450 473 0.95
7 15 0.021 2.1 10.0 0.7 1 23 494 517 494 517 0.95
8 15 1.1e-05 0.0011 20.3 2.6 1 23 523 545 523 545 0.98
9 15 2.2e-06 0.00022 22.5 2.4 1 23 551 573 551 573 0.99
10 15 1.3e-07 1.3e-05 26.4 1.8 1 23 579 601 579 601 0.96
11 15 0.0085 0.83 11.2 4.1 1 23 607 629 607 629 0.97
12 15 0.001 0.099 14.1 2.2 1 23 635 657 635 657 0.96
13 15 6.8e-07 6.6e-05 24.1 0.4 1 23 663 685 663 685 0.99
14 15 1.6e-06 0.00016 23.0 1.7 1 23 691 713 691 713 0.99
15 15 0.0089 0.87 11.2 0.1 1 19 719 737 719 738 0.97

Sequence Information

Coding Sequence
ATGTTAATACTTGAAATATATGGACGGGTGTGTCGAGTGTGCATGTGCAAATCGAATAATTTGCATGACTTAAATGAAACGACTGAAGAGTGTATCACCATGAATGAAATGTTGACCAAGACTGTGTCCGGCATACATGCCAACATCGAGTTCCCAGTGCCTCAAGAGATTTGTGATTTGTGCATGGAGCATTTGCAAATTTCATTTCGATTTCAGCAACTGTGTATGGCCACTAATGAACAGATGCTTAAAATCTGGGAACAGTCTCAAAAAGCAGAAGTCAAACAACAGTTGTTGGCTGGTGAAGTGGATATTGAAGAAGAACCAGACCCTATCAAAGTTGAATATGATATGGAAGAGGAAGAGCAAAAGTTTGATAATGTCGATGTATTAGATTTTGAAAAAGTGGAAAATGATAATAAATGGGAAAATGAGACAACCGATGATGCAAATGGCAAAGATAAATTGACATTGCAAGAAAATTCTCAGAAATTTTCTATTGCATCATCTGGTCGGCAAaacgttgaaaatttttcatgcctagaATGTaaggaaacatttgtaaaacATTCTCAACTAAAACGACATCGTAGTAAACATGAGTCGACCCATCCTTTCGATTGCCGCAAATGTACAAAacgctttaaaataaaaagtttattgcAAAAACATCTTAAAAGCTGTAAAAATGATAAAAGAAAGACGTTAACTAAAAACGATAGTGAggacgatgatgatgacgatgatgaggATGTGCCTCTTAGTGCATTGAAAAAATTGGAAACAGAAAATGAAAGcgATGTTTCAAAGGAAAACGTCAAAAAGAAACGAAAAAGTGTTAAAACCGTTAACAAAAAGACTTCTTATTATTGCTCCAAGTGTAATAGTTATTTCAAATATGGCTATCAGCTTACAAAACATAGTTGTAGTGACATCAGCAATGATCCGCATATAAATAAATGCGAGATATGCGACAAGACTTTTAACACAGAAAATATGCTGCATAAGCATATGAGCAGTAagcataaagaaaataaaactgcatcgaaggaaaataaagttataaagaCTTCAGAAAAAAGAAATGCCTCTAACAGTGACGATGAAGATCAAGTTAAAGAAATGGATTTGGATCTGGAAAATGATGACGAAGGGAATTGGAATGATATAAACCAAGGTGATTCATCAGACGGTAGCGATTCCGATTATGCAGAAAAAGAGAAAAGTACGCCCAAGTCAAAACCAGAGCCAACTTCAAATCAGTTTGCTTGTGATGAATGCAATGCTTCCTTCAGATTTGAAAAACAACGTGCGCGTCATATGAAAAAACATACGGAGGCACATCGCTTTGTATGCGCAATTTGTTGGGATCGTTTCAAATATCCACATATGCTTCAGAAGCACATGGAAAAACATCATCCTGAAGATAATCCCAATCCTAAGGCTGTAGAGACAAAACCAGAAAACATAGAAAAGACTCATATTTGCAGTTACTGTACATCGGCATATTCGAATGTTGGTGGTTTGGCTCAACATATGAGTAAAAAACATCCAGAAATTAAGCCTTTTAAATGTGATAAATGCGACAAGACTTTCGTGGttgaagaacatttaaaaatacatacaaatcgtCATATGggtattaaaaactttaaatgtgATCTTTGTGAtaaatctTTTTCTTTCAAGTTTGCTATGAAACAGCATATGCGTATACATACGGGTGACTTGAACTATTTGTGTACGCTATGTGGCAAAAAGTTCTACAGGCCTAGTAATTTGCGTCAGCATATGCAACGTCATGGTGATGATAAACCCTATACATGTCCTCACTGTCCAAAACGTTTTAAATGTCCTTCGGATCGTTACATACATTTGATGTCACATCAAGAAGGCAAGAATCATGTATGTCAGACTTGCGGTGCAAGGTTTTCACGTGTGGATACTTTACATCAGCATCAAATACTTCACACAGGAGAAAAACGCTATAAATGCGACCAGTGTCCAATGGCGTTCCCCCGTTTGATGAATTTAAATCGACATTTACGTACTCATACCGGTGAAAAACcatataaatgtaaattttgcgAGAAAGCTTATGCACAAAGTAATGATTTGAATAAACATTTACGCACCCATGTAGGTGAGAATACCTATATGTGTACCCAGTGTCCAGCTGCCTACAAATACCAAGCCGACTTAAGAAACCATGAATGGGAACACTACCGTCTGCAGAAGGAGGCAGAACAAAAAGCTAAGGAAGAAGCGTCTGCATTAAAAATGAGAGATGAACAAACTGTAATGGAAGTAAACgtatag
Protein Sequence
MLILEIYGRVCRVCMCKSNNLHDLNETTEECITMNEMLTKTVSGIHANIEFPVPQEICDLCMEHLQISFRFQQLCMATNEQMLKIWEQSQKAEVKQQLLAGEVDIEEEPDPIKVEYDMEEEEQKFDNVDVLDFEKVENDNKWENETTDDANGKDKLTLQENSQKFSIASSGRQNVENFSCLECKETFVKHSQLKRHRSKHESTHPFDCRKCTKRFKIKSLLQKHLKSCKNDKRKTLTKNDSEDDDDDDDEDVPLSALKKLETENESDVSKENVKKKRKSVKTVNKKTSYYCSKCNSYFKYGYQLTKHSCSDISNDPHINKCEICDKTFNTENMLHKHMSSKHKENKTASKENKVIKTSEKRNASNSDDEDQVKEMDLDLENDDEGNWNDINQGDSSDGSDSDYAEKEKSTPKSKPEPTSNQFACDECNASFRFEKQRARHMKKHTEAHRFVCAICWDRFKYPHMLQKHMEKHHPEDNPNPKAVETKPENIEKTHICSYCTSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKEEASALKMRDEQTVMEVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259363;
90% Identity
iTF_01397721;
80% Identity
-