Nfer031259.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000477.1:194713-195480[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-08 3.9e-05 24.3 0.0 4 40 16 52 13 54 0.87 2 2 6.3 1.2e+04 -2.9 0.0 34 44 121 131 120 132 0.79
Sequence Information
- Coding Sequence
- atgtcgaCTAAGGGAAAAAGATGTAATCACAAATCTTCAGAGCAGTCACTACAAGACGCTATGTGTGAAATAAGAACAGGTGGGATGTCAATACTTGGTGCAAGTGTTAAGTATGGTGTTCCCTGTTCAACCATACAGGACAGAATCCATGGGCGCATTCTTGAGGGTCCTAGACGAATGGGTCCACCAACAATTTTGACCGTTGCTGAAGAAGTACGCCTTGAACAGTGGTGCAACGACTTGGCAAAATGTGgctttccatttaaaatttatgaccttttaaacaCAGTTCAGGCCTTTATCAAGGAGGATAAGCGATCCACACCATTCGCAAGCGATCGTCCCGGCCGGAAATGGTTTCACAGTTTTCTAAAACGACATCCTACGTTATCTCTTAGAGAAGCTGAAGGGATAAGTAAGGGAAGAGCTGTTATAACAGAAGAATATATCAGAAAATGGTTTTCTGAgttggaaaattatttaaaagaacaaaatgcTCTTGACATTTTAGAGGACCCAGCACGTATATATAATGGGGATGAAACTAGTTTTTGTATATGTCCTAAAACAGGAAAAGTACTAGCACCTAAGGGGTATCGCAACGTATACTCAATACAGAGAGGAAACGAAAAAGAAACGGTGACGGTTTTACTAGTTTTTTCAGCTGACGGTAAGACAGTGAACCCAATGATTGTATTTCCGTTTTTGAGAGTACCAAAAGACATCGTTAGCAGTCTTCCAGATAAATGGCTTTTGGGGAAATCGTAA
- Protein Sequence
- MSTKGKRCNHKSSEQSLQDAMCEIRTGGMSILGASVKYGVPCSTIQDRIHGRILEGPRRMGPPTILTVAEEVRLEQWCNDLAKCGFPFKIYDLLNTVQAFIKEDKRSTPFASDRPGRKWFHSFLKRHPTLSLREAEGISKGRAVITEEYIRKWFSELENYLKEQNALDILEDPARIYNGDETSFCICPKTGKVLAPKGYRNVYSIQRGNEKETVTVLLVFSADGKTVNPMIVFPFLRVPKDIVSSLPDKWLLGKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900513;
- 90% Identity
- -
- 80% Identity
- -