Nfer017299.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000135.1:3829325-3831530[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-12 8.7e-09 36.0 0.1 1 40 13 52 13 55 0.93
Sequence Information
- Coding Sequence
- atgtccaCCAAAGGAAAAAGATCGCTGCACCAATATTCCGAAGAGTCGATGAAAAGTGCTctaaatgaaataagaaaaggCACAACTTCTATCTCTGCTGCAAGTAAAAAGTATGGTGTCCCGCGTACTACTATCCAAGATAGAATACATGGCCGAATTGCTGATGATGCTAGAAAAATGGGTCCACAAACAGTTTTAACTGATGCGGAAGAACAACGTCTGGCAAAATGGTGTGGAGATCTTGCAAAATGTGGGTTCCCATTAAAACCTCAAGACTTGTTGAATACTGTCCAAGCAATTGTGAAAGGAGATCAACGAACCACACCATTTGTAAATGGGCGAGCGGTGATAACCCAAGAATACATAAGAAAATGGTTCGaagaacttaaaaattttcttactgAAGAAAATGCTTTGGACATTTTAGACGAACCATCTCGAATCTTTAATGGAGATGAGACCAGTTTCAGTATGTGCCCTAAAACAGGAAAAGTATTGGCACCAAAaggatataaaaatgtttatacaaTTCAAAAGGGAAACGAGAAAGAAACCGTTACGGTTCTGTTGGTTTTCTCAGCAAGTGGCCAGACGGTGGTCCCAATGGTTGTATTTCCATACGTGCGGCCACCTAAAGAAGTCGTAAATAGCCTTCCAGAGAATTGGTTTTTGGGTAAGTCGGAAACCGGATGGATGGTGAGCGAAACGTTTTATGAGTATATCGTCAATGGGGTTCATAGTTGGCTTAATGAACACAATGTTCAGCGACCAATTCTGTTATTTGTGGATGGTCATAAATCTCATATGACGTTGGAGTTGAGTAAGTTCTGCGAAAACAATGGTATTATATTATATGCACTTCCTCCAAACACCACACACATTATGCAACCTGCAGATGTAAGTGTTTTTAAACCGTTGAAAGCAGAGTGGAAGAAAACTGTAAGGGAATGGCAGATGAAACAGGAAAATAGTAACAAAGTTGTATCAAAAAAGTGTGGGTTATATCCCTTTAACCCTGAGAACGTCGACTTCACCAAATGTGTTCAAAATCAATCAGAATTATTGGTCGGTGGTCGACATGAAATTACATCATTTGAGGcaacagattttgataaagctatcgaaattattaacaaaatatctCCTAAATTGCGAGAACGGGGAGTTAATTCTGATGTTATTGTGGAAGAAATCTGTAATTTGAAAGAAACGGGAAATGATCAAACGGTTGAAATTTTAGGTGATGTCACTATACAGTCGGGAACGTATGTAATAAATGAAGAAGGGATTTTGGAAatgcagaaaaatataaaagaaccaAAATTACCATCCGAACATGTTTACTGTTTGTCTCCAACAAATTCCAAAGATGATTTGTTTGCACCTAACCATAGCTCAAGTCCAGTCCCAGTCACAAATCCAAATAACATCCAGCCATTTGAATCGATTACTGACTGTCCCTCTCCTACCTCATCCATTAGTAGCACTATAAACAACGTCTTTAAGTCCATTAGCTATTCTCCAAGTACAGGCACTACTATAATTAAAAACGAAGCAATTTCCATGTCACCTACATTCGAAAAACACTTGTTTTATCCAAAATTGCCAAAATCTTCAAGATTTGCTTTAAAGCCCAAGGCTCCAAGTGCAATATCTGCTCTTGCATGGAGGAACCATATAGAGGCAAAAGAAAACGAGAAAATAGCCAAAGCTGAAGGTATTAAGTCAAGAAAACTTGAACGCCAAAGAAGAAAAATGGCAAATGAAAACAAGCCAAAGAAAGTTCAAAtaggaaagaaaaaacaaatttgtagcACATGCGAAGAAGACTTGGATACAGATGCTGAGGACAACGGTCTAAAAAACGTAGGGTGCGATAATTGTCCTCAGTGGTTTCACCTCAAATGCACCATTTTAAAGGAACTAGCCTACGAGGACGCTATCGGAAAAGATTTTGTGTGTGAAGcatgtaaaacaaaatga
- Protein Sequence
- MSTKGKRSLHQYSEESMKSALNEIRKGTTSISAASKKYGVPRTTIQDRIHGRIADDARKMGPQTVLTDAEEQRLAKWCGDLAKCGFPLKPQDLLNTVQAIVKGDQRTTPFVNGRAVITQEYIRKWFEELKNFLTEENALDILDEPSRIFNGDETSFSMCPKTGKVLAPKGYKNVYTIQKGNEKETVTVLLVFSASGQTVVPMVVFPYVRPPKEVVNSLPENWFLGKSETGWMVSETFYEYIVNGVHSWLNEHNVQRPILLFVDGHKSHMTLELSKFCENNGIILYALPPNTTHIMQPADVSVFKPLKAEWKKTVREWQMKQENSNKVVSKKCGLYPFNPENVDFTKCVQNQSELLVGGRHEITSFEATDFDKAIEIINKISPKLRERGVNSDVIVEEICNLKETGNDQTVEILGDVTIQSGTYVINEEGILEMQKNIKEPKLPSEHVYCLSPTNSKDDLFAPNHSSSPVPVTNPNNIQPFESITDCPSPTSSISSTINNVFKSISYSPSTGTTIIKNEAISMSPTFEKHLFYPKLPKSSRFALKPKAPSAISALAWRNHIEAKENEKIAKAEGIKSRKLERQRRKMANENKPKKVQIGKKKQICSTCEEDLDTDAEDNGLKNVGCDNCPQWFHLKCTILKELAYEDAIGKDFVCEACKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074396; iTF_01398411;
- 90% Identity
- iTF_01074396; iTF_01398411;
- 80% Identity
- -