Nfer005885.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000038.1:7925001-7926860[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-06 0.015 16.0 0.0 8 39 399 430 397 434 0.87 2 4 3.2e-14 5.9e-11 42.9 0.0 5 44 450 489 448 490 0.93 3 4 0.023 43 4.9 0.0 27 38 519 530 515 536 0.88 4 4 1.4e-14 2.6e-11 44.1 0.1 4 41 558 595 558 597 0.92
Sequence Information
- Coding Sequence
- atgaATCATTTGAAGTGGATGGGTCATTCGGCCACAATTTTAGATATACATAAAAATCTGCGAGCAGATTTGAAGAGCTGTGAGGTTACATTGGTGGCTAAGGGGCACTGCGTCAAAGCGCACCGTTTCGTTTTATCATCTTGTAGTGACTTGCTACGTTGTCTTCTAACTGATGTTCCCACGGGGCAGGAGTGTTGCCTTATGATTCCCGATATTAAGGGATATTTGTTGGATAATGTTCTAGCCTTTATTTATTTAGGAGAGTGTTCTTTATCATCTACAAATTTGTCAGAGTTCTTAGAAGCCATTAATGTGTTGGGCATTAAAAGTGCAATAAGTTTTGAGTGCAATACAAATGCATTACAAACAGCTCAAAGTAGCAGTCATAACACCATCTCTCTAGATAGCGACACAACTATGGAGACAGTAAGTCATACATTGGCCAACGCGCAGTTAACAGTTGAAGCCTCGAGTGATTCATTGCATCAGGGAGAAATAATTGAAAACCAAAATGTAATACATAACGAGACCCATACTACAGCAACGAGCAGCGAAAATAATTCTGGCGGAACTAGAGAACTTGATTTCTTAGATGTATATCATGAACCTCAACATAAAATAACATATTCAATAGAACATGTTCCAGGCTCTGCGAGTggtaatgaatttattttaacggAAAACTCGGGCACTTTCACTCTTACACATAGTGGTAAATTGGAACCTACAACATCTCCGGCGGAATCATCTAACATGGAGGTTACTGAGGATGAAGGTTGTGAATCACATATTATAGAAGAATACAGCAGTGGCGATGAACCGTTAATTCAAATTAGTGAAACCGAACAGGATCAGCAAAGTGTAACAGTTACTCAGTCAACATCACAACAACATCAGCAACAGCATACAACACCTCTAGTTGCAGCATCACCGACTGCAACTTCTATTATACAAGTAAAGCCAAAATTAAAAGCGCTTAAGTTAAAACATCCACAGGGAACTCAAAGAATAATAGCAAAAATGGAACAACTCTCTGAAGATGCAGCAAGCGACGATCCCATTTCAATATTGCAAACATCAAATGAAAGTTTTACCCTTCTTAAAGATGCCTCCATATTATCAACAAGTAACAATAGTCATGACGAGTCAGCAGATTTTTCAATGAACAACTCTGACATATCTGCAACTGAGTTGGCCTATCAAGCAATGATAAATGAGGGCATGTCTTTGCCGAAGGCTGCCGATAAATTTAATGCTTCAAAAGCTGAACTGTGGCGAAGAGTTCGTAGTACGGGAGTTGAACAGCTCAACAATTCAGTGAAAGTAGATGCTGATAAGATTGATGTTTTAGAATTAGCTAGTAAGGCTGTAATTAACGAGGGTTTATCATTGCAGAAGGCCGCCATACGTTACGATATTTCTAAAACCGTGCTCTGGCGTAGAGTCCGAAAACATCCCCAGTATATGAAAACAGCACGTGAAAATCCTGTTATAACAAAAGCATATGAACGATTGAAATCTGGAGAATCGCTTAAAAGCATATCGCAAGATTTAGATATACCCATGTCTACATTGCACCGGCATAAAGTGCGTCTTTCCCAAACTGGTCAATTACCCGACTTTGTTACGTGCAAGAAACGTGATAGCATGTCAAAAGATGATCTTAAAGTAAAATTATCTAAAGCAGTGCATGCCTGCGTGCACGAAGGAATGTCACAAAATCATGCTGCTATTATATTTCAAATATCGAAAAGCACATTATGGCGCCATCTGCAGAAGCGAGTAGCGGAAGCCGAAGCTGCCGAGACTGAATCTCTGGGCGATGAAGATGAAATTAAACAAGAAGTTATTCTCTCATAA
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPTGQECCLMIPDIKGYLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQTAQSSSHNTISLDSDTTMETVSHTLANAQLTVEASSDSLHQGEIIENQNVIHNETHTTATSSENNSGGTRELDFLDVYHEPQHKITYSIEHVPGSASGNEFILTENSGTFTLTHSGKLEPTTSPAESSNMEVTEDEGCESHIIEEYSSGDEPLIQISETEQDQQSVTVTQSTSQQHQQQHTTPLVAASPTATSIIQVKPKLKALKLKHPQGTQRIIAKMEQLSEDAASDDPISILQTSNESFTLLKDASILSTSNNSHDESADFSMNNSDISATELAYQAMINEGMSLPKAADKFNASKAELWRRVRSTGVEQLNNSVKVDADKIDVLELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPVITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKVKLSKAVHACVHEGMSQNHAAIIFQISKSTLWRHLQKRVAEAEAAETESLGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01397341;
- 80% Identity
- iTF_01074628;