Ndro011846.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990184.1:7338256-7374093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.017 1.2 10.0 1.0 1 23 541 563 541 563 0.97 2 11 5.2e-06 0.00035 21.1 1.5 1 23 597 619 597 619 0.96 3 11 0.00012 0.0081 16.8 2.9 1 23 626 648 626 648 0.99 4 11 8.7e-06 0.00059 20.4 0.4 1 23 654 676 654 676 0.93 5 11 1.3e-05 0.00089 19.8 0.1 1 23 682 704 682 704 0.98 6 11 0.00016 0.011 16.4 1.4 1 23 710 733 710 733 0.95 7 11 1.6 1.1e+02 3.8 9.1 1 22 1534 1555 1534 1559 0.90 8 11 0.0011 0.076 13.7 7.7 1 23 1800 1823 1800 1823 0.97 9 11 0.0014 0.094 13.4 1.6 2 23 1830 1851 1829 1851 0.96 10 11 2.3e-05 0.0016 19.0 1.0 1 23 1857 1879 1857 1879 0.97 11 11 0.016 1.1 10.1 0.1 1 22 1885 1906 1885 1906 0.97
Sequence Information
- Coding Sequence
- ATGAGCCAATGTTGTTTAATTTGCAATAACCGAAATGGTTTGGCAATCAGAAACGCAACCAGTATATTTGCTGAAACAAATAAACTGCCATCCGGCAAGCAAGTAGCTAAAATATTGAGTGAGATATTAGGCAAGACGGTGCAAGAGAAAAATGCACATGCAAGTATATTGTGCAAGAAATGTTTCAAGTCATGCGCCGATTATGATTCGATGCAAGTACGATTGCAAGCAATGAAATTGGAATTGATAGATCAGTTCAAACAATCACTTTCTACATACAATTTGGATTATGACACGTATGATGAACGAAGTTCAAGTCTGCCCAAGACCACACCCAAGAAGCTGGTATTGCCAGCATCGAAATTACAACCTATTCCACCAGATTTATTGTTAAAAGTGGGGAAAATGGCGGCACTCTCGAAATCTAACGTCGTCATACCCAAACCAAAGCCTGTAACATCATCGACAGTCAATCTCAAAGTGACAGTCGGTTCCTCGGTGCTAACTCACACTATCAAAACAACCACAGCCATGCCCCCTGAAACTGAGCCCATACTGTCTCTTTCCAACGCACTGAGACATGAGATAGATAGCTTGGTGGCGTCGTCGAAGGAATCCGATATGCCACAGATTATTGATGAATTGAAAGCTGAAAACAATACTGATGATCATTCCATGGAGATTGATGATGATTGCTCTCTATCAGTGGTGTCGACATCTGAGGGTGGGAATTTGCTTTTACAAGTGGAAGGGGTCAAGACCAAGTCCAAACCGATGACGTCGCTCAGCGAGTTCATAGAGCTACCGTCGCTGGAGGACGGCTCCGAAGACCATGACCAGCACAAGTACATACTGGGCAAGCTGCAGGTGCTCAACCAGGAAGATGGCGACGATGATGATGATGACGAGGGCCACACAATAGTGTTGAACAGCGAGACGGGGTCGATCCTGCGCATGGTGTCGGGCCAGAAGCTGGTGTACTCGGACGGGGAGCTCTCGCTGGTGCTGCCGGGGGACGACTCGCAAGGCGCCGCCGCTGACGAGCAAGCCGACACGCAGGATTCAAATGACGAGTCCCAGATAGAGTTGCAAGTGTCTGGGGACGAGGAAACCGCTAACGCTATCATAGCGGCCGCCCAGGAACAAGGCGGGGCGTTCATAAAGGTGGAGTCCGGGGAGATGTACCGCGTCAAGTCCGTGCACAGCCACCAGGACCAGGACCAGGACCAGCTGGCACTCATCGTGGCGCGCCACGGAGACGCCTTCCGCTGCCTGCTCTGCACCAACACAGACGGAGACGGTCAGTACCACACACACATCTCTATCTACACACCAGGACCAGGACCAGGACCAGCTGGCACTCATCGTGGCGCGCCACGGAGACGCCTTCCGCTGCCTGCTCTGCACCAACACAGACGGAGACGGTCAGTACCACACACACATCTCTATCTACACACCAGGACCAGGACCAGGACCAGGACCAGCTGGCGCTCATCGTGGCGCGCCACGGAGACGCCTTCCGCTGCCTGCTCTGCACCAACACAGACGGAGACGGGCGGGGTGGTGTGCGACGCGGACGAGATGATGCAGCATCTGAAGGCGGCGCACGGCGCGCGCGCGTACATCTGCCGCCAGTGCGGCGCCGCCATGCGCCGGCGCGCGCACTACACCAAGCACATGGAGGAGCACGCGGCGAAGCAGAGCCCGTCCCCCCCCGGCGGTGGGGGGGGCGCGGGGCGGCGGGCGCAGGGGGGCGGGGGCGGGGGAGGGGGCGGGGGGGCGCGGCCGCACGCCTGCGCGCGCTGCGGGAAGAGCTTCGCCTCCAAGTACACGCTGCAGGCGCATCTCAAGACGCACCAGAACCGGCCGCGTCCGTTCAAGTGCAGCCAGTGCGACAAGACATTCCTGACGCAACAGAACTTAAACCAGCACGAGAAGACGCACTCGGGGATCAAAGATTTCGTCTGCAACGTTTGCAATAAGGCGTTCAGCACACAACACAACCTGGAAGTCCACGGCGTGGTCCACTCCGGGAACAAAGCCTTCGAATGCTCCGCCTGCGGCAAAGCCTTCGCCAGGCGAGCCGAGCTCAGGGACCATGTCAGAATACACACGGGCGAGCGTCCATTCGCGTGCGAGCTGTGCCCGGCGCGGTTCACGCAGCGCTCGAACCTGCACTCGCACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGAAGGTACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGAAGGTACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGCAGGTACACACACACACACACACACACACACACACCGCCGCGCCACGCACCTGGACGACAAGCGCTACCACTGCACGCACTGCACCAAGCGGTTCAAACGGCGAAGGCTGCTGGAGTACCACATAAAGTCGATGCACACGGGCGAGCGGCCGCTGGTGTGCGGCGTGTGCCACTCGTCCTTCGTGTACCCGGAGCACTACAAGAAGCACGTGCGCATCCACAGCGGGGAGCGGCCCTACGTCTGCGAGATCTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTGCAGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTTTACGCACACATGAACACCAGCAGTACGGCAGACCAATCGGAGAGCGTCGTTGATGACGGATCGAAAACAAACAAGTTTTCGGAATCGGTAAACAACATAGAGGAGAGGCCGGAGGGGACACTGCTGGAATCCATAGACACTGACCAGTTAGGAGATCAGACCGAGATCGTGGCCAACTGCGAGGGAGGGGGGCTGGTGCGGCTCATACAGGTCAAGCTGCCCGACGGCAACAGCGGCTGGGTGGCGCTCGACCGGTGA
- Protein Sequence
- MSQCCLICNNRNGLAIRNATSIFAETNKLPSGKQVAKILSEILGKTVQEKNAHASILCKKCFKSCADYDSMQVRLQAMKLELIDQFKQSLSTYNLDYDTYDERSSSLPKTTPKKLVLPASKLQPIPPDLLLKVGKMAALSKSNVVIPKPKPVTSSTVNLKVTVGSSVLTHTIKTTTAMPPETEPILSLSNALRHEIDSLVASSKESDMPQIIDELKAENNTDDHSMEIDDDCSLSVVSTSEGGNLLLQVEGVKTKSKPMTSLSEFIELPSLEDGSEDHDQHKYILGKLQVLNQEDGDDDDDDEGHTIVLNSETGSILRMVSGQKLVYSDGELSLVLPGDDSQGAAADEQADTQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVHSHQDQDQDQLALIVARHGDAFRCLLCTNTDGDGQYHTHISIYTPGPGPGPAGTHRGAPRRRLPLPALHQHRRRRSVPHTHLYLHTRTRTRTRTSWRSSWRATETPSAACSAPTQTETGGVVCDADEMMQHLKAAHGARAYICRQCGAAMRRRAHYTKHMEEHAAKQSPSPPGGGGGAGRRAQGGGGGGGGGGARPHACARCGKSFASKYTLQAHLKTHQNRPRPFKCSQCDKTFLTQQNLNQHEKTHSGIKDFVCNVCNKAFSTQHNLEVHGVVHSGNKAFECSACGKAFARRAELRDHVRIHTGERPFACELCPARFTQRSNLHSHRRATHLDDKRYHCTHCTKRXXXXXXXXXXXXXXXXXXXXRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHTHTAAPRTWTTSATTARTAPSGSNGAGTHTHTHTHTAAPRTWTTSATTARTAPSGSNGAGTHTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTHRRATHLDDKRYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTPPRHAPGRQALPLHALHQAVQTXXXXXXXXXXXXXXXXPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTHTPPRHAPGRQALPLHALHQAVQTAKVHTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTAAPRTWTTSATTARTAPSGSNGAGTHTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHTAAPRTWTTSATTARTAPSGSNGAGTHTHTHTHTPPRHAPGRQALPLHALHQAVQTAQVHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRYTHTHTHTHTHTAAPRTWTTSATTARTAPSGSNGAGTHTHTHTHTHRRATHLDDKRYHCTHCTKRFKRRRLLEYHIKSMHTGERPLVCGVCHSSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVQCGAGYMRKQLLYAHMNTSSTADQSESVVDDGSKTNKFSESVNNIEERPEGTLLESIDTDQLGDQTEIVANCEGGGLVRLIQVKLPDGNSGWVALDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -