Basic Information

Insect: Notodonta dromedarius
Gene Symbol: -
Assembly: GCA_905147325.1
Location: LR990187.1:3051576-3060516[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.8 2.6e+02 2.6 0.2 2 23 233 255 232 255 0.90

2 10 0.5 34 5.4 1.4 1 23 287 310 287 310 0.96

3 10 0.00069 0.047 14.4 1.8 1 23 350 373 350 373 0.95

4 10 5.6e-06 0.00038 21.0 2.2 1 23 377 399 377 399 0.97

5 10 0.16 11 7.0 0.8 2 23 407 427 407 427 0.96

6 10 0.0073 0.49 11.2 2.0 1 21 433 453 433 458 0.92

7 10 2.9e-05 0.002 18.7 0.5 1 23 466 489 466 489 0.96

8 10 0.00015 0.01 16.5 2.0 1 23 495 518 495 518 0.97

9 10 4.4e-05 0.003 18.2 0.3 2 23 529 550 528 550 0.94

10 10 3.5e-05 0.0024 18.5 0.2 3 23 558 579 556 579 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.8	2.6e+02	2.6	0.2	2	23	233	255	232	255	0.90
2	10	0.5	34	5.4	1.4	1	23	287	310	287	310	0.96
3	10	0.00069	0.047	14.4	1.8	1	23	350	373	350	373	0.95
4	10	5.6e-06	0.00038	21.0	2.2	1	23	377	399	377	399	0.97
5	10	0.16	11	7.0	0.8	2	23	407	427	407	427	0.96
6	10	0.0073	0.49	11.2	2.0	1	21	433	453	433	458	0.92
7	10	2.9e-05	0.002	18.7	0.5	1	23	466	489	466	489	0.96
8	10	0.00015	0.01	16.5	2.0	1	23	495	518	495	518	0.97
9	10	4.4e-05	0.003	18.2	0.3	2	23	529	550	528	550	0.94
10	10	3.5e-05	0.0024	18.5	0.2	3	23	558	579	556	579	0.96

Sequence Information

Coding Sequence: ATGGCTGACTACTCTGAAAATCTGCTAAAGAAGTTGTGTTGCACCTGCCTAAGCAAGGATCGGAAATTATCGCAATTATGCCGCATTAACGACGGAGTTAATGATTTGTATTTACTGCTGTCCTACGACACGGAAGCTTACAGGGAGGGCTTCTGTAAGGACACAGCAAACCTATACATCTGCTGGGAGTGTCAAGCTATTGTGAAGAAAATTAGCAGATTCAGGCTACAAGCGTGCATAGCTCAGAAAAACTTGACAGACATTGCTGACGGACGAATCAATATAAATTCCCTGAACAAGAGTCTTTCTCAGTTAACAAGATCTCACAATACAACATACAAATCAATAAAATTTGAAGTCCCATCAGAGACTATAGACAATTTCATAGATTGTGGACCGGCCATTGATATCAAGATTGAAAGTGATGATGACATACCCCTATCTGAATTTATGACTGAACGAGAAACAGAAAAAAATATTACCGAGACTAAACAGTTAGATAATACTAACATGTGTTTAGAAAGTCATATACACACTATTACGAAAACAAAAAAGACTGGTCACCATAAAAAATCAAAATTTAAAATTGGAACGAAATTTAAAAAGTATTTCGCAACCGTCGCGGTGGGTGAGGGTGAATTGATTGAGAGTCGGATGAATAGGAGAACGGACGTGGAATTTGTTGACGCGGTGAATAAATGCGATAGTTGTATACAGGTATTTGAAAGTGAGGTAGAATTGGATCGTCATAATTCATCCTTGCATGTGGAGAAAGAAGATCATATTCAGTGTGATATATGCCTAATATACTTGAATCACACAGATATCCAAGACCATAGATTAACACATTATGACAAGCACACATGCAAGCTATGTGAACACATGGCTTATACCATAGACAATATGTTAATACATTTGAAAATAGAACATGGAATACGGATTACAGGGAAAAGGAAAAAGGATCATAGCGATGCTTCAGAAGTTCCAAAGTCAGGGTCGAAGTCTCGAAGGAATCAGTCTACGATGGATAAGAAAACCGCATATGGATATTTATGTACTGAATGCGATAAATTTTTCGACAATAAAAATCAAAGATGGAAGCATGTCCAGCGTAATCACAGGGAAGGATACAAGTGTTCAACGTGTGGCAAGAGATTCGCGTTCAAAAACAACCTCTCCAGACATGAACAGCTCCACAACGCCCCCCCTCCCCGGGAGGAGTGTCCCACCTGTCACAAGATGATCCGCGTGGATCTGCTCAAGATACACTCAAGAATTCACTCAGTGAGGGAGAAGTTTGCGTGCGCAGCTTGTGACAAATGCTTCATCAGTCGCGCCTCCTATGAACACCATCTTAAATACACCCAAGCACATGCCGCGGGGGATATATTGAAATACAAGTGCCCTACGTGCGAGAAAGGCTACAGATCGCGCGGCGAGCTCAGAGACCACGTCAACTATCAACACGTGGGGAAGACACAACACAAATGTCCCATATGCGGGAAGGCTTTGGCGACTCGTCGTTGCATCACAAGACATGTCCGCCGCGCTCACGACGGCGTCAAAGAGAGTGCAAGAGACAAGATGTGCCAACAGTGCGGGAAAGCCTTTAGGGACAAGAAGGGTCTCCGCGAGCACGAGGCGATCCACAGCGGCGAGCGGCCGCTGGCGTGCGAGCTGTGCGGCGCCACCTTCCGCCAGAGTGCGTCCCTGTACACGCACCGCCGCCGCGTGCACCGCCTGCGCGCCGCGCCCCCCCGCGTCTCCTACTGCCCCCCCGCGCCGCCCTAG
Protein Sequence: MADYSENLLKKLCCTCLSKDRKLSQLCRINDGVNDLYLLLSYDTEAYREGFCKDTANLYICWECQAIVKKISRFRLQACIAQKNLTDIADGRININSLNKSLSQLTRSHNTTYKSIKFEVPSETIDNFIDCGPAIDIKIESDDDIPLSEFMTERETEKNITETKQLDNTNMCLESHIHTITKTKKTGHHKKSKFKIGTKFKKYFATVAVGEGELIESRMNRRTDVEFVDAVNKCDSCIQVFESEVELDRHNSSLHVEKEDHIQCDICLIYLNHTDIQDHRLTHYDKHTCKLCEHMAYTIDNMLIHLKIEHGIRITGKRKKDHSDASEVPKSGSKSRRNQSTMDKKTAYGYLCTECDKFFDNKNQRWKHVQRNHREGYKCSTCGKRFAFKNNLSRHEQLHNAPPPREECPTCHKMIRVDLLKIHSRIHSVREKFACAACDKCFISRASYEHHLKYTQAHAAGDILKYKCPTCEKGYRSRGELRDHVNYQHVGKTQHKCPICGKALATRRCITRHVRRAHDGVKESARDKMCQQCGKAFRDKKGLREHEAIHSGERPLACELCGATFRQSASLYTHRRRVHRLRAAPPRVSYCPPAPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -