Ndro000229.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990187.1:3036674-3046894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.036 2.5 9.0 2.1 1 23 251 274 251 274 0.95 2 10 0.032 2.2 9.1 3.0 1 23 281 303 281 303 0.96 3 10 0.00011 0.0074 16.9 0.7 1 23 368 390 368 390 0.98 4 10 0.0045 0.3 11.8 1.3 3 22 402 421 401 425 0.89 5 10 0.0012 0.082 13.6 0.4 1 23 466 488 466 488 0.97 6 10 0.023 1.6 9.6 0.4 3 22 498 517 496 521 0.89 7 10 3e-06 0.0002 21.8 0.5 1 23 529 552 529 552 0.96 8 10 0.0012 0.082 13.6 4.3 1 23 558 581 558 581 0.96 9 10 1.5e-05 0.001 19.6 2.5 3 23 590 611 588 611 0.94 10 10 0.00078 0.053 14.2 0.7 2 23 625 647 624 647 0.94
Sequence Information
- Coding Sequence
- ATGGATTCTAAAAATAATATAATTTGTTGTGGCTGCCTCAGCTATGGTCGAAAAATGCATTTAATTGATGAGTATTGGAAAAGGCAATGTTTTCTACAAATTATCAGCGAAATACCTATGTCCCAACCGGAGACTGAACCAGTGTCCCTGTGTTGGGAGTGCGAGGTACAGCTCAGAAACTTCACGAGATTCAAGCAAAAAGTCAAACACTCTTACAAAACTTACAAGGAATATTTAAAACAGAATAAAACAAGCTACACAGAGATTAACACTAAACCAAGATTTACAGCCCACTCTCTAATAAATATATCACTGTTAAACACCGCAGAGAACACCGAAACAGAATTCCAAATAATTAAACCAGAAGACTGTACACTAGATGACTATGACAATACATTCGGTGACACAAACTCGAACGAAGAGAAACCGTTAAAGATGATGACAACAAAATCTTTGAATGTCGAAACGAAGAAACTAAACAGTGAAGTGTGGTTGCGTGAAGAAGATAAGTTACATGATGAGGAAACCGTGCAAGGTTGTACAGAATTTGCTGATACAAATGAAATTACCAAACTTGTGTGTGTGAAAAAGGAGAAGAAAATAAAAGTGGTGATGAACGGTGAAATTAAGAGGAAAAAAAGAAAATCAAAGGGTACAGTGAACTTATATACAGAAGTAGAGTTGAGTAGAGAAGAATTGGAAGAAGAGAGAAGAATGGCGGTGCTGAAAGAAGAGTATGTTAATGCAATGTTCAAGTGTGAAAGATGTATTGTGTGTTTCGCAAATGCTGAAGATTTGAAAGACCATATACATTTGAAACACGAATTGAACTCTTCTAAACACAGATGTGATATTTGCGAGTGCTCGTTCGCCAGCGAGGTCTCGTACAATTATCACGCGAGCAAACACGCGAAGCGGTACGAATGCGTCGCGTGTACAACGCGCAGCGGCAGCAAGCGAGCAGCCGCGAAACACTTCGAGCAGTACCATTGCCACGGAACAGTTTTGGAATATAAAATACAAAATACCAATTGGCATAATGGACGAAGCGTGGACAAGTCCGCCGATGGCGAAGATAAAAATACAAAACAGAAGAGCCCGTTCCCCTGCGCGCTGTGCGACAAGTCCTTCAAATGGAAGACGTCTCTGAGGAAGCATGTTGAAACCCATCGCATCGAGACCGGACAGAAAAGGAAGCCTTACTGCGAGCCTTGCCGATTATCTTTCACCACAACTTCGAATCTTCAGAAGCATGTGAAGACAAGTTCAAAACATCAAATACAATTAAAACTTAGGAAGCTAAAGGAATCCCTCCCCGAGGAGGCTGCGAGCCCGGAGAAGGAACAAGCTCGGATAGAGGAGATAAAGTGTTCCGTGAACAGCGCGAGGCAGGTGTTCCCGTGTCCGCAGTGCGACAAGAGGTTCCAGTGGCGAGGGAACATGCTGCGGCACGTGCAGAGCCACGCGGCCAGGGTGAAAGGCGAGCTGGTGTGTGGGCCCTGCAACAGGACATTCTCCTCGATCGCCACCTACAAACAACACATGAAGATAAGCAAGAGACACGTCTCCGAGAACGATTTCAAGTACATGTGCAGCGATTGCGGCAAGAGGTTCGCCAATAAAACCCGACTAAAGGACCATATCAACTGGGAGCACCTAAAGAACTATGTGCACACATGCTCAGTGTGTCAGAAGGTGTTCAAAAGCCACACATCGCTGTACTTACACAAGCAGGTAGTACACATGAAAGACAAGACTGAACACTTGTGCCATCACTGTGGGAAGCCGTTCCCTAACCAGGCGAAGCTGCGCGTGCACGTGCGCGCAGTGCACGTGGACGGTGGCGGGGGCGGGGGCGCGGGCGGGGGCGTGTCGTGCGGCGCGTGCGGCGCGCGCTTCTCGCGGCTGTCCTGCCTGTCGCGGCACGCGCGCCGCGCGCACGCGCCGGGGAACACCTGA
- Protein Sequence
- MDSKNNIICCGCLSYGRKMHLIDEYWKRQCFLQIISEIPMSQPETEPVSLCWECEVQLRNFTRFKQKVKHSYKTYKEYLKQNKTSYTEINTKPRFTAHSLINISLLNTAENTETEFQIIKPEDCTLDDYDNTFGDTNSNEEKPLKMMTTKSLNVETKKLNSEVWLREEDKLHDEETVQGCTEFADTNEITKLVCVKKEKKIKVVMNGEIKRKKRKSKGTVNLYTEVELSREELEEERRMAVLKEEYVNAMFKCERCIVCFANAEDLKDHIHLKHELNSSKHRCDICECSFASEVSYNYHASKHAKRYECVACTTRSGSKRAAAKHFEQYHCHGTVLEYKIQNTNWHNGRSVDKSADGEDKNTKQKSPFPCALCDKSFKWKTSLRKHVETHRIETGQKRKPYCEPCRLSFTTTSNLQKHVKTSSKHQIQLKLRKLKESLPEEAASPEKEQARIEEIKCSVNSARQVFPCPQCDKRFQWRGNMLRHVQSHAARVKGELVCGPCNRTFSSIATYKQHMKISKRHVSENDFKYMCSDCGKRFANKTRLKDHINWEHLKNYVHTCSVCQKVFKSHTSLYLHKQVVHMKDKTEHLCHHCGKPFPNQAKLRVHVRAVHVDGGGGGGAGGGVSCGACGARFSRLSCLSRHARRAHAPGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -