Ndro010126.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- ZFX
- Assembly
- GCA_905147325.1
- Location
- LR990185.1:7459925-7473891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 1.7 9.4 0.3 1 23 144 166 144 166 0.97 2 12 0.68 46 5.0 2.5 1 23 173 195 173 195 0.96 3 12 1.8 1.2e+02 3.6 0.9 1 15 199 213 199 222 0.79 4 12 0.0001 0.0071 17.0 3.5 1 23 227 249 227 250 0.92 5 12 1.7e-05 0.0012 19.4 0.5 2 23 257 278 256 278 0.97 6 12 5.8e-06 0.0004 20.9 0.7 2 23 292 313 291 313 0.97 7 12 0.027 1.8 9.4 2.0 2 23 316 338 315 338 0.93 8 12 0.0014 0.098 13.4 3.6 2 23 349 371 349 371 0.97 9 12 0.023 1.6 9.6 0.6 1 23 378 401 378 401 0.92 10 12 0.004 0.27 12.0 0.6 6 23 414 432 412 432 0.95 11 12 0.00011 0.0073 16.9 3.5 1 23 441 463 441 463 0.96 12 12 0.00072 0.049 14.3 0.3 1 23 468 491 468 491 0.97
Sequence Information
- Coding Sequence
- ATGGAAAATAAATGTGTGAAACTGGAACCCCAAGACCCTGAAGAAACAGGAGAAACCTTTGAGTATGCCAATAGCCAGAAATGTAAAGAAGAAGTTTGGTTAAAACAGGAACCTAGTAGCGAGGACACAAAAATAGCGATTAAACTTGAAGAGGAGAGTTGCAATACTGCTGTTTATCAAAGCATTGTACAAGATTTAAAACTATTACTGCCACTCGAGAAAAGGATTGAAACCAAAGCTAATGATGCATTGGACCAAGCCCATGTGGAGAATAGCAATGCAGGGAAGGCACCTGATAATAATCAGTACTCGGAGGTCCCCCTGATGTACTCGTACGAGATCACAAAGCATGTCCAGATAGTGACCATAGACGAGGAGGAGCGTCAGATCGAGCACAAGGAGATCCTGAGCACGCGGCGCCACATGCGGCACGTGTGCGAGCACTGCGCCGTGGGGTTCGTGGTGGAGGACGCGTACCTCATGCACATGAAGATACACGCGCCGGAGTCTGGTGCCCACGAGTGCGACATCTGCCACTCGTGGCTGAAGACCGCGGACATGCTGTACCGGCACCGGCTGCGGCACTACCGGCGCTACCGCTGCCTGCTCTGCGCCGAGCGGTTCAAGGACAAGGACCGCGCCGCCTGCCACGTCATGACCGACCACCATCGGCAGGCCTTCCCCTGCATACACTGCGGGAAGGGATTCAAACGGCCGCAGTACCTGAAGCGGCACGTGCAGCAGCACCACACCAAGCCGCACCGGCTGGAGTGCCCCGTCTGCGGGAAGGTGTTCCACGAGCGCGGCTGGTACCGGACGCACGTCAGAACGCACAACGTGGAAGTGAAAACGCAGACGGTGAAGATCACGGTGACGTGTGACGTGTGCTCGCGCAACTTCCGCAGCAAGGCGAGCCTGCGGCGCCACCTGGCGACGCACGACGACACCTGCGCCGTGTGCGGCGCGCGCTGCGCCACGCGCCACGAGCTCGCCCAGCACTACCTGCACGTACACAACGAGGTCTACACAGGGGCGCCGGAGGAGACCTGCCCGCAGTGCCTGCGCGTGTGCGCGTCGCGCGTGCTGCTGCGACACCACATGCGGCGCATGCACACCGACAGAACCAAGAAGTACGAGTGCTCGCACTGCCAGCGGCGCTACCTGACCAAGGGCGAGGTGCGCGCGCACATCGTGTGGTCGCACGCGGGCGCGGGCGCGCGCGGCGGCCACGCGTGCAGCTGCGGCCGCCGCTTCCGCACGCCCGCGCTGCTGCGCGACCACCGCGCCCGTCTGCACGCGCCCGCGCCGCCGCCCCGCGACCACGCCTGCGACCACTGCGGGAAGGCCTTCGGGAACAAACAAGTCCTAAACCGCCACAAAAAGAGTCATTCGAACGAGATGTACCCGTGCAATGAGTGCGGGCTGCTATTCAAAACTCAACCTTACGTCAAGATCCATTATCAAATCAAACACCTCAACATGACCCGCGCGCAGATCAAGGAGCAAAGGAAAATGAACCGTAACCAAACCGCACAGAACATCATAGAGGGCAGACAGAATATTTGGGAACCTCAGATATCGCTCAAAGATGCTGTCGAGAAGGAGACGGCTGATCCTTTGGAGGTGCAAGAGGGAGGAGTCGAGATAAAATTAGAGAGAGAAGATGACGGTTTACACGTGCCGTTGTTAGAGACTTTTGTTAATGTTGATAGAGGTTAG
- Protein Sequence
- MENKCVKLEPQDPEETGETFEYANSQKCKEEVWLKQEPSSEDTKIAIKLEEESCNTAVYQSIVQDLKLLLPLEKRIETKANDALDQAHVENSNAGKAPDNNQYSEVPLMYSYEITKHVQIVTIDEEERQIEHKEILSTRRHMRHVCEHCAVGFVVEDAYLMHMKIHAPESGAHECDICHSWLKTADMLYRHRLRHYRRYRCLLCAERFKDKDRAACHVMTDHHRQAFPCIHCGKGFKRPQYLKRHVQQHHTKPHRLECPVCGKVFHERGWYRTHVRTHNVEVKTQTVKITVTCDVCSRNFRSKASLRRHLATHDDTCAVCGARCATRHELAQHYLHVHNEVYTGAPEETCPQCLRVCASRVLLRHHMRRMHTDRTKKYECSHCQRRYLTKGEVRAHIVWSHAGAGARGGHACSCGRRFRTPALLRDHRARLHAPAPPPRDHACDHCGKAFGNKQVLNRHKKSHSNEMYPCNECGLLFKTQPYVKIHYQIKHLNMTRAQIKEQRKMNRNQTAQNIIEGRQNIWEPQISLKDAVEKETADPLEVQEGGVEIKLEREDDGLHVPLLETFVNVDRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -