Ndro015041.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990174.1:9967747-9970332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00043 0.029 15.0 0.9 1 23 291 314 291 314 0.92 2 12 0.027 1.9 9.4 2.8 1 19 328 346 328 350 0.92 3 12 9.6e-06 0.00065 20.2 3.0 2 23 356 377 355 377 0.97 4 12 1.8e-05 0.0012 19.4 1.1 1 23 381 404 381 404 0.97 5 12 0.059 4 8.3 1.3 1 23 407 429 407 429 0.97 6 12 0.00035 0.024 15.3 0.6 2 23 497 518 496 518 0.96 7 12 0.19 13 6.7 0.3 2 23 538 560 537 560 0.95 8 12 8.6e-07 5.9e-05 23.5 4.1 1 23 566 588 566 588 0.98 9 12 0.0004 0.027 15.1 1.5 2 23 594 615 593 615 0.96 10 12 0.0013 0.088 13.5 3.9 2 21 622 641 621 644 0.95 11 12 8 5.5e+02 1.6 1.1 1 19 652 670 652 671 0.86 12 12 0.056 3.8 8.4 4.4 3 19 684 700 683 705 0.92
Sequence Information
- Coding Sequence
- ATGGAAGGAGAAGAGTTCAGTATGGACACGGAGGGAGCTTATCCCGTCCTATTTATACCGAAAGTGTGTACAACGTTGGAAACGAACTGCCAGCTGTCGGAAAATGTGTTTATACACCTGAACATAACATCGCCTGATACAGAAGGTAACCAGATTTGCATTTACACTGGGTACTGTAATATAAAAATCATAGATTCCAATGAAATTAACATACGGTATAACACACAGAACATATTAAGCGAGAACATTCCTATAATATTGACAGAGGCGAAACAAATCACGTTTCCTACGTACAACGACTCGCAGGTGTGGATCGACCCCGCCCGGAGTCCTTATGTGTACAACCAGTGTGACTCACCGCTCCAAGCTTACACAATACCCGAGACCCACAACCACATCACTGTCAAACAGAACAATACGTATATAACTCAGAATGTTTACAACTACAATGAGCCTAAACATTCACCTGTAATCGAAGAAACAAGATCAGTCCGAAAGGTGCATGAAACCGTCCAGATGGACAATTTTAACTTGTACGAAGAAGACGAGCTAGCCTGCGGAGTGTTCCTCTCTCAGTTATCAGATGATATTATCAATGAGAATGAAATGAAAGCGAGAGATGAAAGGAAGTTCATCGGACTGAAAACAGACAATGAGGCATTGAAACAACTTATGTCAACAGATGTACAGTCCGTTTGTAAGCAACAGAAGACTATATTGTTTCTAGGACATGATTCGGAATCTGGTGAGACAATTCAGAATATTTGTATCAATGACCCAATGTTGGAATGTACGAACACCGGGGAGGTGGAGACTGAAGTTGTTATTGACCACGATTCCATCCCCTTGCTGCCTCCCCCAAAAAAGAAATACCAATGCGACAAATGCAAGCAAATATTCGACAAGCTGTCTGCCTTCAAACAACACATGGTTGGCAGCCACCGGCTCTCAAGCAGCTGCCACGCGCCCACCAACGTCAAATTTATGTGCACAGACTGTGGAAAATACCTCAAAACCCAGGAAAAGTTTGAGCAACACTGCCTCGGACACGGCGACCCAGATCTAGAATGTAACAAGTGCCATAAGGTTTTCGCTTCAAAATTCACCCTTAGAAATCATTTAAAGATACATACAAGGAAATACCAGTGCAGTTACTGTACTAGGTCTTACTCCAGGGTTGATGAGCTCAAGGCGCACACGATAAAATCCCACGATATATTTTCGTGTGATTCTTGTCCATTCATCTGTGACAAATTTTCTGAGCTAGCATCTCATCAGGATACACATAGATTTTCAAATCAGTCCCATTCTAGCGAGTCTGAATTTCCCGAAGAACTGTTTGAGGAGATGAATACCAATATTTCAAACTCCCCGGAATATGTGATGGAGTCTGAAGACGAGCCCAGTGCCGACTCTGTGATAGCCAAAGTGATGTCAAATCAGATTTTCGATATGAAATGTATCAAGACGAATAGGAGATATAATAAGACTTGCGACGTATGCTTCAAGAAGTTCGACCGCATTGGAGACCTAAAGCGACACCTCATAGAGCACGTGATACGTAGCACCCTGGCCAAGAACCCCATCAATAAATACGGGGTCCTCAACATACGATGCGAGGTATGCCAAGAGAAAGTGTTCAATAAAATTGATAGATATAAAGCCCACTTGCGCGAGCACGCCAAGCTAACCATATACAAATGTACCTTCTGCGACAAGTCATTTAGCGACTCCTCCAACTTCTCTAAACACAAGAAAATCCACGGCACTACATATTTACAATGCGACATGTGCCAACGCAAATTCAACTCTAAGAAGATGATGATACAGCACATGGAGTACCATAACAAAAATGGACCCGTGACGTGTCAATTTTGCGGTAAAACATTCCATTTTGAGTCGATGTTAAATAAGCATATTAGGTGCGCACATAACAACGAAAATACGATTAAGTTCAAATGTAGGTTTTGTGAGGATTCTTTTAAGACTTTGAAGGAGAAATGGGATCATGAGTGGTCGGTGCATCATGTCAGGAAGGCGATCGTTGATTGTCTTATGTGCGGCTGCCGGTTCAGGAAGTATTCAGAGTTGAAGAGACATTGTATCAACGAACACGATACTGTGATTCCGCCAGCCAAGAGATTGCTTAAATGGAAATCGAAGAAAAAAAGTTTGAGGTCATAG
- Protein Sequence
- MEGEEFSMDTEGAYPVLFIPKVCTTLETNCQLSENVFIHLNITSPDTEGNQICIYTGYCNIKIIDSNEINIRYNTQNILSENIPIILTEAKQITFPTYNDSQVWIDPARSPYVYNQCDSPLQAYTIPETHNHITVKQNNTYITQNVYNYNEPKHSPVIEETRSVRKVHETVQMDNFNLYEEDELACGVFLSQLSDDIINENEMKARDERKFIGLKTDNEALKQLMSTDVQSVCKQQKTILFLGHDSESGETIQNICINDPMLECTNTGEVETEVVIDHDSIPLLPPPKKKYQCDKCKQIFDKLSAFKQHMVGSHRLSSSCHAPTNVKFMCTDCGKYLKTQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHLKIHTRKYQCSYCTRSYSRVDELKAHTIKSHDIFSCDSCPFICDKFSELASHQDTHRFSNQSHSSESEFPEELFEEMNTNISNSPEYVMESEDEPSADSVIAKVMSNQIFDMKCIKTNRRYNKTCDVCFKKFDRIGDLKRHLIEHVIRSTLAKNPINKYGVLNIRCEVCQEKVFNKIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTYLQCDMCQRKFNSKKMMIQHMEYHNKNGPVTCQFCGKTFHFESMLNKHIRCAHNNENTIKFKCRFCEDSFKTLKEKWDHEWSVHHVRKAIVDCLMCGCRFRKYSELKRHCINEHDTVIPPAKRLLKWKSKKKSLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179775;
- 90% Identity
- iTF_01179775;
- 80% Identity
- -