Ndro000399.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990187.1:4569407-4580125[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0028 0.19 12.5 0.9 2 23 227 248 226 248 0.96 2 11 0.02 1.4 9.8 0.0 2 22 256 276 255 278 0.88 3 11 0.0014 0.094 13.4 4.9 1 23 309 332 309 332 0.98 4 11 0.00099 0.067 13.9 2.1 1 23 336 359 336 359 0.94 5 11 0.02 1.4 9.8 0.8 3 21 377 395 376 400 0.93 6 11 6.1 4.2e+02 2.0 0.0 2 23 409 430 409 430 0.87 7 11 0.01 0.68 10.7 1.8 2 23 451 473 450 473 0.95 8 11 3.2e-06 0.00022 21.7 1.9 2 23 483 504 482 504 0.97 9 11 0.0014 0.094 13.4 0.5 3 23 512 532 510 532 0.97 10 11 1.4e-07 9.3e-06 26.1 0.3 1 23 538 560 538 560 0.98 11 11 3.6e-06 0.00025 21.6 1.4 1 23 566 589 566 589 0.98
Sequence Information
- Coding Sequence
- ATGCATAAACTTGCTATCTGCCGGATTTGTTTAGACGCGAACGCTTTATGTGAGATCATGGACCCACAGCTACATGGGATATATGAAAAATTAACTGCAATACCGTTCCAGACAGGTGATATGCGTCCGCGAATGCTGTGCTACATATGCCACGCGCAGCTGAACTCCGCTCGGAGACTCATGCTCAAGTGTCTGAAGGCCGAGGAGATACTTACTGAGATGTTGAACCAGCTACTAAACAATGATGAGGCACCTAAACTCACACTAATAGACCGATCAGCTCTTAAACAGCTGTCTGTTACTGAAGTAAAACAAGTCAACATGGAGAGTGCTGTCCACAATGATAGAGCTCTTGTGAAAGAAGAAATGCATATCGGTGATGAGAGAGATGTGAAACTGGAGGAACAAAGTATACAAGAGACCGCTGATACTGTAGACTCTGAACGTGACAATGAACAGACCCTATCAGACTCAGAGGATGATATACCGTTGAATAATATAAAGAAGAATATCGAAGCAGTGAGAGAACACAAGAAATTAAGAGTAAGGAAGAAAGAACGAAGAGGATCGAAAAAAGGTATAAAGTTGGAGTCCCGCGAGATATTGCTCAGTAAGGAGCAACAAATGGAGAATTTGCTCGCCCGCGCCAAGTCTATCAACTATATCAACTCGCCGCTGAAATGCGAACAGTGCTTCAAAGGCTTCGTCAACTCCAAAGCGTACGCTAACCACAAGGAGAAACATGATGAGCGCAGCGGCGCGTGGTCGTGCGAGGTGTGCGCGCTGCGCTACAGCTCGCCGGCGCAGCTGCGCGCGCACGCCGCCGCCGCGCACGCGCGCCTCTACCAGTGCACGCGCTGCCACCACCTCTCGCACACCCGAAATCAGGCCCGCGTTCACGAGAAATGGCACGATGGATACACGTACGAATGTCAACTCTGCAGTCATAAGTTTAAGAAACCGACGTCATATTTATCGCATATGCGCAAGCGGCACCCCACGGAGCACGTTTGCGACATGTGCGGGGAGAGCTTCGTGGGGAAACACGGCCTGCAGATGCACAAAACGAAGACGCACAAGAATGATGACACGAGCGAAAGGTCGGACGAGCCGCCGGCGGACAGGTTCTGCAATGATTGCAACATACAATTCCACTCGCTGGACGCATGGAAGAGACATATACTGAGCTCCGTGAAACACGCGCTCAGCACTGAGAACAGTCGCGAGTGCGGCGTGTGCGGGGAGCGGGCGGCGGGGGGCGCGGCGCTGGGCGAGCACCTGCGCCAGCACGCGCGCGCTCTGCGGGCCGCGCAGCCTCCCCCACCGGCGAGCGGGGAGCTCGTGCACTTGCACTGCCAACAGTGCGGCGCGCGGTTCCTGACCCGGTCGAAGCTGCAGGCGCACGTGAACAGGACCCACCTGGGGCTCAAGTACAACAAGAACATCGTGTGCGAGATCTGCGGCAAGAAGTGCACGTCGAACGCGACGTTGAAGTATCACCAGCGCACGCACACGGGCGAGCGGCCCTACGGCTGCGGCAGCTGCGGGAAGCGCTTCGCGGACAGCAACCAGCGCCGGCTGCACGCCCGCACGCACTCCGGCGACCGGCCCTACGTCTGCGCGGTCTGCGGGAAGCGCTTCACGCAGAAACCCGCCCTCAACAGGCACTATCGAGTACACACGGGGGTTAAGCCGTACACGTGCCAGTACTGCGCCCGCACGTTCAGCCAATCCAACTCTCTGAAGCTTCACGTACGGACCGTGCATCTGAAACTACCCGCGAACAATAAAAAGAGGAAAGAACCAGTGAAGTCTGTGCAGAATGATGAACTACCCGCCGAATGA
- Protein Sequence
- MHKLAICRICLDANALCEIMDPQLHGIYEKLTAIPFQTGDMRPRMLCYICHAQLNSARRLMLKCLKAEEILTEMLNQLLNNDEAPKLTLIDRSALKQLSVTEVKQVNMESAVHNDRALVKEEMHIGDERDVKLEEQSIQETADTVDSERDNEQTLSDSEDDIPLNNIKKNIEAVREHKKLRVRKKERRGSKKGIKLESREILLSKEQQMENLLARAKSINYINSPLKCEQCFKGFVNSKAYANHKEKHDERSGAWSCEVCALRYSSPAQLRAHAAAAHARLYQCTRCHHLSHTRNQARVHEKWHDGYTYECQLCSHKFKKPTSYLSHMRKRHPTEHVCDMCGESFVGKHGLQMHKTKTHKNDDTSERSDEPPADRFCNDCNIQFHSLDAWKRHILSSVKHALSTENSRECGVCGERAAGGAALGEHLRQHARALRAAQPPPPASGELVHLHCQQCGARFLTRSKLQAHVNRTHLGLKYNKNIVCEICGKKCTSNATLKYHQRTHTGERPYGCGSCGKRFADSNQRRLHARTHSGDRPYVCAVCGKRFTQKPALNRHYRVHTGVKPYTCQYCARTFSQSNSLKLHVRTVHLKLPANNKKRKEPVKSVQNDELPAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00622244;
- 90% Identity
- -
- 80% Identity
- -