Ndro004916.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Notodonta dromedarius
Gene Symbol
-
Assembly
GCA_905147325.1
Location
LR990188.1:3653714-3666770[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.29 20 6.2 1.0 1 23 236 258 236 258 0.94
2 16 0.22 15 6.5 0.0 3 23 288 309 286 309 0.93
3 16 0.4 27 5.7 0.2 2 23 330 352 329 352 0.91
4 16 0.00054 0.036 14.7 2.1 2 23 358 380 357 380 0.95
5 16 0.001 0.07 13.8 1.2 1 23 385 408 385 408 0.96
6 16 0.27 18 6.2 0.2 2 23 411 433 410 433 0.93
7 16 0.016 1.1 10.1 1.5 2 22 440 460 439 460 0.93
8 16 0.013 0.86 10.4 0.6 1 23 519 542 519 542 0.93
9 16 0.12 8.4 7.3 0.1 3 23 571 592 569 592 0.91
10 16 0.038 2.6 8.9 0.3 2 23 615 638 614 638 0.94
11 16 0.00049 0.033 14.9 0.6 3 20 645 662 643 666 0.90
12 16 0.0096 0.65 10.8 0.4 1 23 671 694 671 694 0.97
13 16 0.00074 0.05 14.3 0.4 2 23 700 722 700 722 0.94
14 16 0.00012 0.0079 16.8 4.7 1 23 726 749 726 749 0.97
15 16 0.00014 0.0092 16.6 0.7 2 23 756 777 755 777 0.96
16 16 0.01 0.68 10.7 2.3 1 23 783 805 783 805 0.97

Sequence Information

Coding Sequence
ATGGAATTTGACGACATTGTAGTGAAAGAAAGCCCGGGCCTTTGCCGGTGCTGCCTGTCCGAGGGATGCTACAAGGATTTGGGCTCTGAGTATACCTGGATGAGTGATACAGAAGTATACGCTGATATGCTCTTGGACTGCTTCGATATTAGTATAACTCAACATAACGTAGGTCCGAATGGTCCCAACCGCCTCATATGCGAAGTGTGCATCACCCGTCTCCGGGATGCGTGCAACTTCAAGAAGCAAGTGCTGGACTCTGAGAAGAAGTTCATCGATATGGTGGGCAGGGGAGAGTTTAAGCCTAAGTTGCTTATATACCAAGCTCAAATGAAGTCGGAACAGAATCATGAGACCTCCGGTGACGTTGGCGACGCTGAGTACCTGGAAGACATTGACTTTGGAGATGATGACGTAATAAAAGACGAATCGGCCGTTGAACCCACCGTCTCTGACGTCACGGTCACCCCCCTACCCATTAAGGGGAAACGGGGACGACCTCGCAAGGCCGCTGCCCCCTTGAAGCCGGAGAAGAAAGCGAAAGTCGCCAGGCTGGAGGAAAAGCCGAGGTCATCGAAAGCAGTCACCAAAGGTCTAAAACCGCGGATATACAAGGGCTGCGAGTCCTCCTCGATGCGCAGGCGCAGAAACCTTCAAATACTGTTCAACAACACCTCGATAATACCGTTTAAGTGGCGCGGGAAATATCTATGCTTCTTCTGTAGTAAAGATATAAGTGAATATGCGGAATTGAGGAAACATACCAAATTGCACGGCCATTGTTCTACCAAAGATCATTCGCTCAAAGTTTTAAAAGGCGGTCAGAATATGGAAATCAAAATAGATGTGTCCGGCATTGCTTGTGAAATCTGTTCGGAACCTTTCCAGACCTTTGATGAAGTCGTTAATCATTTGTTTGTTAAACACAAGCTTGAGTACGATAAAGACGTCGAGATGGCCATCGAAGAGTATAAACTACTCGATCTGAGCTGTTTAGCTTGCGAAGAGAAATTTTCGTACTTCGGCTACCTAGTCTCACACGTGAATAATAATCACCCCAAAAACTGTCTCATCTGCGACAAATGTAACCAGAAATTTAATAAGAAGAGAGACTTGTTTTCTCATATTAAAAACTACCACAGAGAAGGTGGCTATCAGTGCGAAATGTGCCCACAAACTTTTAGCTCGTTGAACATATTAAGGAAACATAGAAATAACAGACATTTGACCAGATGCAACATATGCCAGTTGAAACTGCCCTCAGCTGCGCTAAAACAGAAGCACATGGACCTGGAACATCCCGATGATGGCTCGCTACAGTGCGATAACTGTTTCAAAGAGTTTCACACTAAGCAGGGTCTGAAAATGCACGCGAGGAAATGCAAAGGTGCAGACCTTTTCGAAATCGCAATTAAGAAAGAAGAATATGTTGCAATGGATTTAGATCAGAATTATGAAGAAACCAAACGTCCTAGTGTCAAACAAATCAGGGAAAATATAGTTACAGTGATAAACATGTCCACGGCTATCCCTTTCAACTTTTATAAAAACAAATTTAATTGTTTTTACTGCTCAAAAGACTTCCAAGATTCCGATGCGATGAGGGAGCATACGATTTTGGAGCACCCTACTTGCGATGTCAAGCAAAAGTGTATAAAGAAATGCCGAGAGTCAGTAGCTTGCGTCAAAATTGATATTCAAACTTTAGCTTGTAAAATATGCTACGAATCGATGTCCGATCTGGACAATCTCCTCGATCATTTGATTGCAAAACATGAAGCTAACTATGACAAAAGTATAACAACTTGCCTCCAACCCTATCGCCTTATAAAAGACCACATGACCTGTCCCAATTGTCCGGGGGAAGTTTTTCGTTTCTTCGGCACCCTACTCAAACACATGAATAACAAGCATACCAATAATAATATCATCTGCGTTTACTGCGGCCAGACATTTCGTAGGGATCAAAATTTGCGTGTGCATATATGGAGACATCACAGGGACGGTCGTTTTAAATGCACCATCTGCGGTGCGGAGTGTAATATTCCGTCACGGTTGTACATGCATATGGCCAGGGCTCATGGTGTCAAAGCAGCGAAATGCCCAAAGTGCTCAGAGAGTTTCGCTACACAGTATTTGAGGCAGAAGCATTTGATAGAAGCTCACGATTCCGGCCACAAGTGTTCGTATTGCGGCAAGCTGTTCACAAGAAACTCCTTCATGAGAGATCACGTCAGAAGGACGCATTTGAAAGAGAAAAACGTTGAGTGTACGATATGTAACATGAAGTTTTTTAATAATATTCTGTTGAGACGCCACATGGTCAAACATAGCGGGGAAAAGAATTTCCATTGCGATGTTTGCGGGGAGCGTTTCTTTTGGAGGAAAAGTCTTAGGACACATATGGGTAGGCATAGCAAACATTTGAACATTCCAATGTAA
Protein Sequence
MEFDDIVVKESPGLCRCCLSEGCYKDLGSEYTWMSDTEVYADMLLDCFDISITQHNVGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMVGRGEFKPKLLIYQAQMKSEQNHETSGDVGDAEYLEDIDFGDDDVIKDESAVEPTVSDVTVTPLPIKGKRGRPRKAAAPLKPEKKAKVARLEEKPRSSKAVTKGLKPRIYKGCESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFFCSKDISEYAELRKHTKLHGHCSTKDHSLKVLKGGQNMEIKIDVSGIACEICSEPFQTFDEVVNHLFVKHKLEYDKDVEMAIEEYKLLDLSCLACEEKFSYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYQCEMCPQTFSSLNILRKHRNNRHLTRCNICQLKLPSAALKQKHMDLEHPDDGSLQCDNCFKEFHTKQGLKMHARKCKGADLFEIAIKKEEYVAMDLDQNYEETKRPSVKQIRENIVTVINMSTAIPFNFYKNKFNCFYCSKDFQDSDAMREHTILEHPTCDVKQKCIKKCRESVACVKIDIQTLACKICYESMSDLDNLLDHLIAKHEANYDKSITTCLQPYRLIKDHMTCPNCPGEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCTICGAECNIPSRLYMHMARAHGVKAAKCPKCSESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMGRHSKHLNIPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013343;
90% Identity
iTF_00622236;
80% Identity
-