Ndro001078.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990169.1:10317567-10326323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.088 13.5 1.0 1 23 258 280 258 280 0.99 2 11 0.00055 0.037 14.7 2.9 1 23 287 310 287 310 0.96 3 11 0.001 0.069 13.9 0.2 1 23 341 364 341 364 0.97 4 11 0.0018 0.12 13.1 0.6 2 23 373 395 372 395 0.96 5 11 0.0066 0.45 11.3 0.0 2 20 406 424 406 426 0.94 6 11 9.8e-05 0.0067 17.1 1.1 3 23 436 456 436 456 0.98 7 11 2.3 1.5e+02 3.3 0.1 3 23 473 494 472 494 0.92 8 11 4.4e-05 0.003 18.2 4.3 1 23 511 533 511 533 0.98 9 11 0.0032 0.22 12.3 0.0 1 23 539 561 539 561 0.94 10 11 1.1e-06 7.5e-05 23.2 3.0 1 23 567 589 567 589 0.96 11 11 0.0014 0.098 13.4 4.0 1 23 595 618 595 618 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGTTTTAAATATTGCAGAGCTTGTCTCGCGGTTGATGTGAAGATGTACAGCTTTCATTCGATGTTTAATGTATCCATTGGAACGATCTATTCGCAGTTGGTGCAACTACCTGTTTATGAAGAAAACCAACATGTTTGCTTTGAATGTGCGGGACTTTTGCATAAATATCATAAATTCAGGTTAAAGTGTCACCGAGCTCATAGCATACTATCCAGAATTATAATTGATACAAGTCAGATAACAAAAAAAGATGTACAAAACATAAACAGAAAACATAATCAATTGGAATCAAGTTTAACAGTCTCCCCTTTAGCTACTTGTTACGAAGAACCATCAAATGTAGAAAAAGTTGAGATCCTACAAATTAAACCCATAGAACTTCCAGAGAATATTGAAATTAAAAACGAAGAAGAGATAAGTGACACAGAAGTATTAGACAGAGATATTAATGAAACTAATATAGATAGAAGTTCCAACAAAAGCTTAGAAAAAATATCAAAAAGTAAACGTAAATCTAAAACGAATAAAGAGACAAAAACAAAAAAACGGAAAGTCCAAATTGAAATCTCTAAATCAGACGATAATCTTAGTGACAATGAGCCATTGTCTAAATGTATCACAACCAAAGAAAAGAAAGTGAAAAAGAGAAATGGTTTGAATATTAGCTACTTCGAGGATTACGCCACCGTTATATTCTTAACTCCAGAAGATGCGAGAAAAGAGGTTCTGTTGAGAAAAGAGTCCAGCAACTACAAGAAGTCTCCGTTCAAATGTGATAAATGTTATAGAGGGTATGAAGCCAAGGCAGCATTTGAAAACCACATGAAGAAACATAGCATTGAGTATGGTGAGCATGAGTGTGAGTTGTGCGGGCTGCGGTTCCCTCAGCAGATATACCTGTGCAAGCACCGGCTCTCCAGCCACAAGAGGAAGTTCAGCTGCAAGCTGTGCCCCTACGTGTGTTATTGCACTTACCAAGCGAAAACTCACGTCAGTTTGCATAAAGGAAAGAAATATCCGTGCAATGACTGTGGTGACATATTCAGTATGCCAAACAGTCTGCTGATGCACAAACGCATGAAGCATTTAAAGGAGTCTGTCGGTGAGAGTGTGTGCGAGCACTGCGGGAGCACGTTCGGGACGCCGCGAGGGCTCTTCCTACACACTATGAAAGTACACAGACAGGATAAAAATGAAAAACTAGGTCCTGAATGCGGGGACTGCGGTGTACATTTCACTTCGGAAGCCGCATGGAAACGGCATTTAGTTCTGTCAACGAAACATAAAGTTAGCAACGGTTGCAAGTCTTGTGGTGACACATTTTCAAACTCTGAGGACCTCAAATCCCATATGCGACTGCATTCGCGCAAGCACAGGAATCGATGTGACAGTGTCAAACTACCCGCGGCCTGCGCTATTTGTGACAAGTGGCTGGTCAACCGCGTGGAGTACAAATCGCACGTGACGTCAGAGCATCCGCTCTCCGACGAGGCCAACAAGTTCACCGCCGAAGACAACACGCCCTTCGTGTGCGAAGTATGCGGGCAGATGTTTAAGCAACAGTGCTTCCTGCGGTACCACCAGCGCAAGCACACGGGCGAGCGGCCCTACGCCTGCGCGCAGTGCGGCAAGGCCTTCCCGCTGGCCGGCGCGCTCGCCGTGCACCGCGCCGCGCACGCGCGCGCGCGCCCGCACGCCTGCCACATGTGCGGCCGCGCCTTCACCTTCAAGAGCGCCTTGAACAAGCACATCAAGGTCCACCTCGGCATTCGGCCCCACAAGTGCGCGATATGCGACAAAGGCTTCATCCACATGTGCGACTTGCGCCTGCACATCAAATACGTGCACGACAAGGTGCCGTGGCCCAAGAAGAAGACTAAACGCAAGGCCGCAGAAGAAAACGCACAGTTCTTAGAGTACAACTGA
- Protein Sequence
- MEGFKYCRACLAVDVKMYSFHSMFNVSIGTIYSQLVQLPVYEENQHVCFECAGLLHKYHKFRLKCHRAHSILSRIIIDTSQITKKDVQNINRKHNQLESSLTVSPLATCYEEPSNVEKVEILQIKPIELPENIEIKNEEEISDTEVLDRDINETNIDRSSNKSLEKISKSKRKSKTNKETKTKKRKVQIEISKSDDNLSDNEPLSKCITTKEKKVKKRNGLNISYFEDYATVIFLTPEDARKEVLLRKESSNYKKSPFKCDKCYRGYEAKAAFENHMKKHSIEYGEHECELCGLRFPQQIYLCKHRLSSHKRKFSCKLCPYVCYCTYQAKTHVSLHKGKKYPCNDCGDIFSMPNSLLMHKRMKHLKESVGESVCEHCGSTFGTPRGLFLHTMKVHRQDKNEKLGPECGDCGVHFTSEAAWKRHLVLSTKHKVSNGCKSCGDTFSNSEDLKSHMRLHSRKHRNRCDSVKLPAACAICDKWLVNRVEYKSHVTSEHPLSDEANKFTAEDNTPFVCEVCGQMFKQQCFLRYHQRKHTGERPYACAQCGKAFPLAGALAVHRAAHARARPHACHMCGRAFTFKSALNKHIKVHLGIRPHKCAICDKGFIHMCDLRLHIKYVHDKVPWPKKKTKRKAAEENAQFLEYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179743;
- 90% Identity
- -
- 80% Identity
- -