Ndro004974.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990188.1:4096840-4099983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.026 1.8 9.4 1.8 1 21 88 108 88 109 0.96 2 15 0.005 0.34 11.7 0.5 2 23 181 202 180 202 0.97 3 15 0.0023 0.16 12.8 0.4 1 23 206 228 206 228 0.96 4 15 0.026 1.7 9.4 0.2 1 22 233 254 233 256 0.78 5 15 0.0036 0.25 12.1 2.4 1 23 262 285 262 285 0.98 6 15 0.0012 0.082 13.6 1.7 1 23 292 315 292 315 0.97 7 15 2.7e-06 0.00018 22.0 1.5 1 23 322 344 322 344 0.97 8 15 7e-07 4.8e-05 23.8 2.4 1 23 350 372 350 372 0.98 9 15 0.00036 0.025 15.3 0.6 1 23 483 506 483 506 0.98 10 15 0.037 2.5 9.0 0.2 2 23 533 554 532 554 0.96 11 15 1.1 73 4.4 1.0 1 23 575 597 575 597 0.96 12 15 2.6e-05 0.0018 18.9 0.6 1 23 601 623 601 623 0.98 13 15 0.062 4.2 8.3 0.2 1 22 657 678 657 680 0.89 14 15 0.0021 0.14 12.9 2.5 1 23 687 710 687 710 0.96 15 15 0.00012 0.0082 16.8 2.2 1 23 717 739 717 739 0.98
Sequence Information
- Coding Sequence
- ATGTCGAGGAGAACGACACACGCACACTCCCCACCAGACACCGACCTCGCCGGCGAGGTCGACGAACCCCCGCTTCCGCTAGAAGGACACCAACCGCATACGAGCGACGAAATTCTTGAAACGAATAGTGCCTCCCGCAAAATACCGAAGTCAAAATACGTTAGAAGCGCCCGCGCGGAAGCCAGGATTATCACGAAGGAAAACGCCACATCCATACTTAAATGCTGGACGTTGTGCCCATTCAGATGGAAGAAAAACAAATTCAAGTGTGCCTACTGCGAATCGGACTTTACCGAATGCTCTGAACTCCGCGAACACACCAGATACTGCTCCACACAGCATTGCGTCAAAGATATCTACAGCAAATTCAAAGAAATGCCTCTTATCAACGTGGACACCACAAACGCTGTCTGCACCTGCTGCTCCGCGCCATACATGGACGTCTCGCACATGAGACAACACGTCGTCGAACACGGCTTCGACTTCGATACCAAGCAACCCGACGGCGTCTTGCCATTCTCCCTGGACAAGCAGTCATGGAAATGCGTGATTTGCTTCAAAATCTTCAACAATTTCTTGAAGCTATACGAGCACATGAATGTACATTACCAACACTACATCTGCGCGAAATGCGGCAAGGGTTATATGACAGCGCGTCGATTGAGGAAGCATTTTGAAGTACACATGTCTGGGTCCTTTCCCTGCAATGAATGTGGTAGGGTGTTCAATATTAAGACAGCGCGGGACTCGCACAAGGCGTCAGCACACGCTAAAGGCCCCAGATACGAATGCCCGCATTGCAATCTACGCTTTCACGTTTATTACGAACGAATGGAGCACATGAGGGTCGCACACAGCGAGAGAGAAGTGTCATACAGCTGCTCCCACTGCGAAATGACCTTTAAAACAAGCGGCAAAAGAGCTATTCACGTACGATCCGTGCATTTCCCGCCTCAGTTGGACTTCAGTTGCGATTACTGCGAGTGGCAGTTCAAATCGAACTATGAGTTGAAGAGACACATGGTCAGACATACTGGAGAAAGGAATTTTCATTGTTCTGTATGTGGCAAGTCTTTTCCGAGGAACAGAGCGCTGACGACTCATCTGAAAACGCATCAGGATCTGAACTGCAAGTGGAAAACTACCAGCAAGCAAAGAAGGCTGCCCCAGTTGAGGACAGACCCGGATCAAAACGACTTACGGCCTAATTCTGAAACTTTACTCAAATGTTTAAGTTCCGCTTACGAAGCGGACGGGAATAAGATTAAACGAGTTAGGAAGTTGAAGGAGACCGTGAGCGATCGCCAAATGCGCAGGCGCCGCCGGGCGAACAACCAACTGCCGGAGGAATCCGAAAAGAGAATATCAAGAACGATGATGAGACGAAACGCTTTGACTCTTCTGGAATGCTCCACCGCGTGGGCATTCAGGTGGTTCCATAGCGCTTTCTACTGTTCGTATTGCGAAAGGAAATTCGTTGACATACCCCTCCTACGAGATCACGTCAAAACAAACCATTTGAACGAAGCTCCCACGAAGAAAATCTTTTCCAAATTGACGGAAAACAACATGGTCAAAGTCGACATTGCAGATCTCACTTGTAAAATATGCAATAGATATCTCAACGGTATTGATTCGTTGAAAGACCATTTGTTGATTCATGGAAGAACGTTGAATATCGACTACAGCGATGGACTGCTACCTTTCAAATTGGATGAAGAGTTCACATGTCAAATCTGCTTCGACCAGTTCCAAAGTTTTGCAAGAATCAACGTGCATATGAACACTCATTATCAGAACTATGTTTGCGATGCGTGTGGAAAAGCTTTTATATCCAAATCTCGGTTCAGGAAGCATGTGCAGTCCCATGAGCGGGGCAGTTTTCCTTGCGGTTCGTGTGACGAGGTCTTAGACACCAGGGCCGGGAGGATGTGTCACCGGTTACGAGTCCATAGAAAAGGGGTTAGATACGCCTGCCCTCGGTGTCCGCAACTCTTCACAACATACGACAGTAGGGCTAAACATCTAGTCGCGTCTCATGATCAACAGAAGATGGAATATCATTGCAACGCTTGCGAAAAATCGTTTGAAACGAGCTCGAAACGCGCCGCTCATATGAGGTTCACGCATGCGAATGTTGAAAGAAGATTTAATTGCACCCAGTGTTTTGCAAATTTTGTCAGCAGATCGAAACTGCTGAGGCATTTGAGGACACATAACAGTGCTACCTAA
- Protein Sequence
- MSRRTTHAHSPPDTDLAGEVDEPPLPLEGHQPHTSDEILETNSASRKIPKSKYVRSARAEARIITKENATSILKCWTLCPFRWKKNKFKCAYCESDFTECSELREHTRYCSTQHCVKDIYSKFKEMPLINVDTTNAVCTCCSAPYMDVSHMRQHVVEHGFDFDTKQPDGVLPFSLDKQSWKCVICFKIFNNFLKLYEHMNVHYQHYICAKCGKGYMTARRLRKHFEVHMSGSFPCNECGRVFNIKTARDSHKASAHAKGPRYECPHCNLRFHVYYERMEHMRVAHSEREVSYSCSHCEMTFKTSGKRAIHVRSVHFPPQLDFSCDYCEWQFKSNYELKRHMVRHTGERNFHCSVCGKSFPRNRALTTHLKTHQDLNCKWKTTSKQRRLPQLRTDPDQNDLRPNSETLLKCLSSAYEADGNKIKRVRKLKETVSDRQMRRRRRANNQLPEESEKRISRTMMRRNALTLLECSTAWAFRWFHSAFYCSYCERKFVDIPLLRDHVKTNHLNEAPTKKIFSKLTENNMVKVDIADLTCKICNRYLNGIDSLKDHLLIHGRTLNIDYSDGLLPFKLDEEFTCQICFDQFQSFARINVHMNTHYQNYVCDACGKAFISKSRFRKHVQSHERGSFPCGSCDEVLDTRAGRMCHRLRVHRKGVRYACPRCPQLFTTYDSRAKHLVASHDQQKMEYHCNACEKSFETSSKRAAHMRFTHANVERRFNCTQCFANFVSRSKLLRHLRTHNSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -