Ndro009921.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990185.1:1478146-1493289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0081 0.55 11.0 0.9 1 23 259 281 259 281 0.97 2 11 0.01 0.71 10.7 0.4 2 23 289 310 288 310 0.96 3 11 7.8 5.3e+02 1.6 0.2 1 8 314 321 314 324 0.89 4 11 2.9e-06 0.0002 21.9 1.7 1 23 344 367 344 367 0.94 5 11 4.7e-05 0.0032 18.1 0.4 2 23 374 396 373 396 0.96 6 11 6.9e-06 0.00047 20.7 0.2 1 23 409 431 409 431 0.96 7 11 0.00037 0.025 15.2 0.3 1 22 437 458 437 462 0.94 8 11 0.00018 0.012 16.2 1.8 3 23 472 493 470 493 0.95 9 11 3.5e-05 0.0024 18.5 0.3 1 23 499 522 499 522 0.97 10 11 9.7e-06 0.00066 20.2 0.4 1 23 531 553 531 553 0.99 11 11 0.02 1.4 9.8 0.3 1 19 559 577 559 582 0.90
Sequence Information
- Coding Sequence
- ATGGGTGACAGGAATAAACGGGAAGAAACTAAAACCGCGAAAGCGAAGCCAGAGTACTCGAAAAAATATTGCTTAGGATGTTTGTGTGTGGAAGATGAAAGGAGATTGGACAATTATACATTTCAATGTGGACCATTTAAAAATATATTCCAGATGGACTGCATCCGGCTGTGTTATTTGTGTAAACCGATAGCTCAGCGTTCAGAACAATTTATTCAGAGTGTGCAAAGCAATCAGATGTTATTGGAAAACTTTCAAAATGTAATAGATGAAACACTATCAGGATGCACACAAGCCCAACCACTAGTCAATCTTACCCAAGTGCCATTAGATGTCATAGAGCTATCGGAGGACGCCCATCATTCTGAGGAGTCGTACTCCGTCGTGTACGGCCGGAGCAGTGTTCGTGTGAAGGTGGAGATGAAAGAGGAGGACATGTTGGACCATTTAGAGGGGGAGCTTATGAATACTGGGAATGATTATTCAGACTCACTAGTCAAAGACGAGGAGGGTTTCTCTTTGAAAGCGTTATTGAAAGAGGAAATGGAATTAGAAGACATCGACAGCATAGACCTTATGAGCTTAAGCGCTGCTTTAAAGAAGAATAAAATGAGGAGAAAGAGTAAAATTAAGAAGGAACAAAGTAAAATGAAGAAGAAGACATCAGGCAAGTACTGTGAACACATGAAAATAAAAACGATGTACATAACGAGGGAACAATGCTTGGAGGAGCGAGTAATGATGTTGCAAGACAAGAAGTATCTAGGTTGCGTATATAAATGCGAGAACTGTATCAAAGGATTCAATCTCAAGGATAGCTACGAGAGGCATCTTGGGAAACACAGTCAGAGTATGGGTGATTTGGAATGTGACATATGCAAACAAAGAATGGATACCGAGGAGAAACTAGTCAGGCACATGAAATATCATTTAATCCGATACAAATGTATGGAATGTGGATTGACCCGGATCTGTCGGCTGACGATCAAGGACCATTACTCCGCGTACCACTGTCAGGGGCGCCACCAGTACATTTGTTCTCAGTGTACCAAGTCTTTCAAACGTCAAGTGTCCCTCCGGAAACATATAGCGTACACTCACAGCAAGAGAGAGCGCGTGGTGTGTTCCTACTGCCACAAGTCGTACGCGAACAACGAGGTGCTCAACTCACACATGTTGGTGATGCATACAAAAGAAGTCACCTGCGGTACAGTGACGAAAAAGTATGTGTGCCCGGACTGCGGGATGGCGTTCAAAGCGCCCTCGCAGCTCAAGACACACAGCACGAAGCACTCCCACCGGCGGGACTACTACTGCGTCGAGTGCGACAAAAGTTTCAAGTCGGATTCGATATTGAAGAATCATTTGAAGACCGCTGCACCTCACGTCAACTATAGAGAGTTACCGTTGGCATGCTTGCATTGTGACAAGCGGTTCTCGATACGCCGCGACCTAGAGAGACACACAAACAGGGTGCATCTCAACGTGAAACCGTACTCTTGCGACAGCTGTGATAAGGCGTATGTGAACAACTGGTCGCTGACACAACACAGGCGGCTGGTGCATGAAGGGTACAAGAGACCTCTCCAGTATCCCTGCTCCATGTGTGACAAGATATTTGACCGCAAGCAAATACTAAAGGCTCATATAAGAACCCACACTGGTGAGCGACCGTATCAATGCGGCAAGTGTCCGGCGCAGTTCAGCCAGTCCAGCATCCTGAGGACTCACGACAGACTCGTCCATCTCAAGCTAACCAGGGACGGGAGACCCAAGGCTGTTTCCATGAAATAG
- Protein Sequence
- MGDRNKREETKTAKAKPEYSKKYCLGCLCVEDERRLDNYTFQCGPFKNIFQMDCIRLCYLCKPIAQRSEQFIQSVQSNQMLLENFQNVIDETLSGCTQAQPLVNLTQVPLDVIELSEDAHHSEESYSVVYGRSSVRVKVEMKEEDMLDHLEGELMNTGNDYSDSLVKDEEGFSLKALLKEEMELEDIDSIDLMSLSAALKKNKMRRKSKIKKEQSKMKKKTSGKYCEHMKIKTMYITREQCLEERVMMLQDKKYLGCVYKCENCIKGFNLKDSYERHLGKHSQSMGDLECDICKQRMDTEEKLVRHMKYHLIRYKCMECGLTRICRLTIKDHYSAYHCQGRHQYICSQCTKSFKRQVSLRKHIAYTHSKRERVVCSYCHKSYANNEVLNSHMLVMHTKEVTCGTVTKKYVCPDCGMAFKAPSQLKTHSTKHSHRRDYYCVECDKSFKSDSILKNHLKTAAPHVNYRELPLACLHCDKRFSIRRDLERHTNRVHLNVKPYSCDSCDKAYVNNWSLTQHRRLVHEGYKRPLQYPCSMCDKIFDRKQILKAHIRTHTGERPYQCGKCPAQFSQSSILRTHDRLVHLKLTRDGRPKAVSMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179699;
- 90% Identity
- -
- 80% Identity
- -