Ndro016391.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- Bcl11a
- Assembly
- GCA_905147325.1
- Location
- LR990179.1:8029106-8037262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.74 10.6 1.8 2 23 69 90 68 90 0.96 2 12 0.0087 0.59 10.9 0.5 3 23 98 119 96 119 0.94 3 12 0.054 3.7 8.4 0.5 2 23 127 149 126 149 0.95 4 12 2.5e-06 0.00017 22.1 2.2 1 23 155 177 155 177 0.98 5 12 3.6e-08 2.5e-06 27.9 0.8 1 23 183 205 183 205 0.98 6 12 1.5e-05 0.00098 19.7 0.2 1 21 211 231 211 232 0.96 7 12 1 70 4.4 5.3 3 19 260 276 259 281 0.92 8 12 1.1e-05 0.00072 20.1 3.7 1 23 613 635 613 635 0.97 9 12 7.4e-05 0.005 17.5 3.0 1 23 642 665 642 665 0.96 10 12 0.25 17 6.4 0.3 1 23 688 711 688 711 0.92 11 12 0.00016 0.011 16.4 2.5 2 23 718 741 717 741 0.93 12 12 6.2e-06 0.00042 20.8 1.5 1 22 747 768 747 768 0.96
Sequence Information
- Coding Sequence
- ATGGATACAACTTTACCGTTCTTCAGTCATCCTTTCGTGGATTCAGACGCTATTGACCTGGGATTCGACAAGAAGGTGTATGAGGAGCTGAACGCGGGGTTGGGGACGCAGTCTCTGTTGGGGACTGACGATGGGCTCCTGGCGCAGTTCCTGGCCGAGGACGAGCCGCTGGAGGAGCCCGACCTGAACGGGCCCACTACACTGCACTGTGAGATCTGCAGGAAGCAGTTTGACAACGCGAAGAAGTACTACGGCCATTTGCGGGTCCACTCTAAGGATAATCTTTGGATATGTGACAAATGTCCGAATGAGAAGTTCTCAACAAAACAGCAGCTGATGAAACACGGCCTGACCCACAAGCCCCTGGAGCGCGTGTGGAAATGCGTTCAGTGCAGCATGGCCTTTGAGTCTCTGTGGAGGCTGCAGCAGCATCTCTTCACTAAACACCTGAATTGCAGACCCCATAAGTGTGATATTTGCGAGAAGACATTCCAGAAAGCGTCGGATTTGAAGAAACACATTGACACGCATTCAGATGTGAAGCGGTACCCATGCCAGCAGTGCGGGTTGTCGTTCAAGGACCGCTCCAACCTGCGCCGCCACATGGCGCGGCACACCAACGAGAAGCCTTTCTCCTGCCCCGGCTGCAGGAAGAGATTCACACAGGTGGCGTCGCTGAACCGGCACTTGCGCGCCTGCGCGGCGGGGCGGGCCGCGCAGGGGGCGGGGGCGGGGGCGGGGGGCGCGGCGGGAGCGGGGGGGCTGCGCCGCAACCACTGCCGCGTCTGCCATCAGACATTCCAGTACAAGAGCCAGCTGCTCGAGCACTGTGTCAGGGAACACACGAGCAACCCTACGCCGCAACCCGCCAAGGAAGCAGACAAAGAAGATGGAAGCCAATCCAATGTCGACGCGAATCGTATCGTGGAGAACATCGTAGACGACATACTCTCGGCTGAAGACGACTACCTCACCATGCCCACTCACAGCGAGATCCTCAACGCTTACAACCAGGACCTGGACAACCCCGACAACCTCATGCAAATTGAACTGCTCAAGGAAATAAACCAACTACACATACTCGACGGCGAGTTGTTCTACGATCACGAGCTGGACGCGATGCAACCCAGCCACATGTTTAACGACGACATCGATTACAACTGCGAAAGGAACGAATTCGATTTCGGTAATACCAACCGGTGTATCGATGAGGATATCATGAGCGCACTGTACCAGGACAAGCCGCATTTGCCAGACGAACTACTTAACCCTGTGGGTGATAAAAATCAACCATCCAAGGTGCCAACAGTGTCTATGAACGAGTGTTCCACTATATTTGAGAGCGATGTCGATTTAGAAGCCAGTACGAATCTGGCGGCCAATTTGAACCAGCTTATAGGGGAGAATAACGTTCAATACATTTCTACTGAAGATGACGATACGTTTATAATCAGTTTGAACAGCGAGATTGATGCTCAACAGTTGACTGATATGTTGAACATAGGTGTTGGAGTCAAAGAGAAAGAGAATGAAACAGAACATGAGAATATTCCTCAGGAAGTTAATCCGGAAGAGAGTGTGGCTGAGTCCATAATAGTAAAAATTCAAAATGAAATGCCAGATGCAAGTTTAAGACAGCCGGGAAACAATGCTGAATCGTCTATAATAGTTCAAATACAGAGGCCGAACTGTGATATGCCAGAAGATGCAAGTGCAATGAAGCCAGTTAGCAATGATGACGTGACAGTGAAAATACAGCAACCTAAAGATGCACAAGTAATAAATGTTAGTGATAAGGAGAGTGTGAGGAAGAAAAGAGTGAAGAAACAACATAATTTTATATGTAAAATTTGTCATAAGATCTTCAAAAAGAAGGACAATTTCAGATCTCATATAGGTACCCACGAGCCGGGGCTGCGCCGCCACAAGTGTGAGACATGCGGCTTGTCGTTCGGGTACCGCTCGTCGCTGAACAAGCACCGCTTGTCGCGGCACCCCGCCCCCGCCCCCGCCCCCGCCGCCCCCTCCCCCGGCGCCGCCGCCCCCCCCGCGGCGCCGCCGCACGCCTGCCTGCTCTGCGGCAACACCTACCGCGCCGCCTGGATGTTGAAGCAGCACGAGGAGCGCGACCACGCGCATCGCACGCCGCACGCGTGCGACCACGCGGGCTGCGGGAAGAGCTTCTACAAGAAATCAGACCTGGTCGTTCACAAGAGGTACCACAGCGGCGAGCGGCCTTATAGTTGTGACATCTGCAATCGCACGTTCCCGCACGTGTCGCATCTCAGGAGGCACGCGCGAACGGTGGACTGTACTAAACGGTAA
- Protein Sequence
- MDTTLPFFSHPFVDSDAIDLGFDKKVYEELNAGLGTQSLLGTDDGLLAQFLAEDEPLEEPDLNGPTTLHCEICRKQFDNAKKYYGHLRVHSKDNLWICDKCPNEKFSTKQQLMKHGLTHKPLERVWKCVQCSMAFESLWRLQQHLFTKHLNCRPHKCDICEKTFQKASDLKKHIDTHSDVKRYPCQQCGLSFKDRSNLRRHMARHTNEKPFSCPGCRKRFTQVASLNRHLRACAAGRAAQGAGAGAGGAAGAGGLRRNHCRVCHQTFQYKSQLLEHCVREHTSNPTPQPAKEADKEDGSQSNVDANRIVENIVDDILSAEDDYLTMPTHSEILNAYNQDLDNPDNLMQIELLKEINQLHILDGELFYDHELDAMQPSHMFNDDIDYNCERNEFDFGNTNRCIDEDIMSALYQDKPHLPDELLNPVGDKNQPSKVPTVSMNECSTIFESDVDLEASTNLAANLNQLIGENNVQYISTEDDDTFIISLNSEIDAQQLTDMLNIGVGVKEKENETEHENIPQEVNPEESVAESIIVKIQNEMPDASLRQPGNNAESSIIVQIQRPNCDMPEDASAMKPVSNDDVTVKIQQPKDAQVINVSDKESVRKKRVKKQHNFICKICHKIFKKKDNFRSHIGTHEPGLRRHKCETCGLSFGYRSSLNKHRLSRHPAPAPAPAAPSPGAAAPPAAPPHACLLCGNTYRAAWMLKQHEERDHAHRTPHACDHAGCGKSFYKKSDLVVHKRYHSGERPYSCDICNRTFPHVSHLRRHARTVDCTKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -