Ndro004929.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990188.1:3742501-3752614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.16 11 7.0 0.2 1 23 64 87 64 87 0.92 2 26 0.44 30 5.6 2.4 2 23 115 137 114 137 0.95 3 26 0.3 21 6.1 4.7 2 23 160 181 159 181 0.96 4 26 0.026 1.8 9.4 0.4 1 23 185 207 185 207 0.96 5 26 0.00063 0.043 14.5 0.7 1 23 212 235 212 235 0.97 6 26 0.063 4.3 8.2 0.1 2 23 243 265 242 265 0.91 7 26 0.012 0.81 10.5 4.1 2 23 273 294 272 295 0.95 8 26 4.6 3.1e+02 2.4 2.4 1 13 301 313 301 315 0.89 9 26 0.16 11 7.0 0.6 1 23 378 401 378 401 0.94 10 26 0.19 13 6.7 0.3 2 23 429 451 428 451 0.95 11 26 0.3 20 6.1 4.6 2 23 474 495 473 495 0.96 12 26 0.014 0.98 10.2 1.0 1 23 499 521 499 521 0.96 13 26 0.0007 0.047 14.4 0.9 1 23 526 549 526 549 0.97 14 26 0.0043 0.29 11.9 0.2 2 23 557 579 556 579 0.92 15 26 0.012 0.81 10.5 4.1 2 23 587 608 586 609 0.95 16 26 0.00017 0.012 16.3 2.9 1 23 615 637 615 637 0.98 17 26 0.0023 0.16 12.7 1.1 1 23 705 728 705 728 0.95 18 26 0.002 0.14 12.9 0.9 2 23 755 777 754 777 0.96 19 26 0.61 41 5.1 1.4 2 23 800 821 799 821 0.96 20 26 0.009 0.61 10.9 0.1 1 23 825 847 825 847 0.96 21 26 0.0016 0.11 13.3 2.4 1 23 852 875 852 875 0.97 22 26 0.062 4.2 8.2 0.3 2 23 883 905 883 905 0.95 23 26 0.00032 0.022 15.5 0.4 3 23 914 935 913 935 0.95 24 26 0.0018 0.12 13.1 3.0 1 23 941 963 941 963 0.97 25 26 3.2e-06 0.00022 21.7 1.8 1 23 969 991 969 991 0.99 26 26 0.0007 0.048 14.4 6.1 1 23 997 1020 997 1020 0.97
Sequence Information
- Coding Sequence
- AACGAAGAGAATGTGGCCTTCCTCGAAATTAATGTTGAAGCGAAACCGCTAGCTAAAAAAACGGGCGCCAAGAAAGAGAAGGCTGTGCTTAAAAAGCGCATGAAAGAAGTGCATAAACACAGGCACAATTTGACGGAAATACTGAACCATACCAACGCTACTCCAATACTGCGGCAAGGAAGGATAGGGTACATGTGTAACTCTTGCATGCAAGAGTTCCCCGAGCCCGGAGACCTCAAGAAACACACCTTAGACTCGCATACAGCCGTCGGCAACCAAGCGAGCTTCTTCAAAAACTCCACAATGTACGAATACTGCATCAAGCTCGATATAACCGCGTTAAAATGCAACATATGCCACCATAACATCCAATCGCTAGAGGAACTGATGGATCACCTCAAAAATACGCACCAAAAAACGATATATTCCGACATAAAAAATCACATTTTGCCATTCAAATTTGAGAGCGAACAGCTGACCTGCTGCCTCTGTCCGACCTCGTTCGATAAGTTCAAAGTGCTGCAAGAGCACATGCACAAACATTACAGGAACTACATCTGTGATATCTGCGAGTCGGGATACGTGAATCAAGGGTGTTTGGCGCGCCACAAATACATCCATAAACTAGGGACATTCCCTTGCGAGTACTGCCCTAAGATCTTCGACACAAAAGTTAAGAAGATAATGCACCAACGATCCAATCACACGCACAAGAACTCCATGATCAAGTGCGGTTACTGTGACGCGGGATTTAGAGACTTGTATCTCAAAGAGGCGCATCTGACCGAAGTGCACGGCATCAAGCCTCGGCAGAACAAGTGCAACGCATGCGGCAAATGCTTCTTAACACCCGCCAAATTGAGGGTCCACACCCAGCGACATCATCTCCTACTGCGGAGGCATAAATGTACTCAGTGTGACATGGAGTTCTACGATTCTGGTTGCGAAGAAAATGTGGCCTTCATTGAAATCAAAGTAGAACCGACACCGTTGTTTAAAAAAGAGGGTGGCAAGAAAAAGAAGGCAGTCCTTAAAAAGTGTGTAAAGGAAGGCCATAAACACAGGCACAATTTGTCTGAAATACTGAACAACACCAATGCAACGCCCATACTGCGCCATGGAAGGATAGGGTACATGTGTCACTCCTGCATGCAGGAATTTCCGGAAGCCGGCGACCTCAAGAAACACACCTTGGAATCCCACCCCGCTGTCGGCAATCAAGCGAGCTTCTTCAAAAACACCACAATGTACGAATACTGCATCAAACTCGATATAACCGCGTTAAAATGCAACATATGCGGCAATAACATCCAAACGCTAGAGAAACTGATGGAGCACCTCAAAAATACGCACCAAAAAACGATATATTCCGACATAAAAAATCACATTATGCCATTCCAATTTGAGAGTGAACAGCTGACCTGCTGCCTCTGTCCGACCTCGTTCGAGAAATTCAAAGTTCTCCAAGAGCACATGCACAAACATTACAGGAACTACATTTGTGATATCTGCGAGTCGGGATACATTAATCAGGGCTGTTTAAAGCGCCACAAGTACATCCACAAGCTAGGGACCTTCCCTTGCGAGTACTGCCCCAAGATCTTCGACACAAAAGTTAAGAAGATGATGCATCAGCGCTCCAACCATACGCACAAGGACTCTGTAAGCAAATGCGGCTACTGTGACAAGGGGTTCAGGGATTTATACCTCAAAGAGGCGCATCTGACTGAAGTGCACGGCATCAAGCCTCGGCAGAACAAGTGCAACGCATGCGGCAAATGCTTCTTGACACCCGCGAAATTAAGGGTCCACACCCAGCGACATCACCTCCTATTGAGGAGGCATAAATGCACTCAGTGTGATAGGGAGTTCTTCGCTTCCGATACACTTAAAAGGCACATGGTGACGCATACTGGGCTAAAAGAGTTCAAATGTGAGCACCATAACCGTGTTGCGAAAGAGATAAAACTTGAAGCCACTACTGTTGCTTCAGAAGTGAAAACAGAACTGCCTAAAGCTTCTAGAACGGAGGTGATAAAACATCGGATGAATATAAAAGAAATACTCCTCTGCACTAACGCGACACCTATCAGACGATACGGAGGGATCGGGTACACGTGTTGTTATTGCGACAAACAGTATGTTGCACCGGAGGAATTGAAGATACACACGCAAGAAACCCACACAGACGTCAACCTAGCCAATTTCATGAAACATATGAACATGTCCGAGTACGTTGTGAAGTTGGACGTGACGAATTTGACGTGCAACCTGTGCAACACAACCATCAACAGCTTAGAGAACCTGTTCCAGCATTTGAAAACACAACACGAACGAAAGATATACACTGATATTCAGAACCATATATTTCCTTTCCAATTTGGCAGTGGCATGTTGAAATGTATGATATGCTCGAACGCTTTCAACAAATTTAGGGTGTTGGCAAATCATATGCATCTGCATTACCGCAATTTCATTTGCACGGTCTGCGACTCTGGATTCGTGAATCGGAACGCGCTGGCGCAGCATTCCCTGAAACACAACACCGGCGTGTTCACTTGCGACTACTGCCCGAAGAGTTACAGCACCCAGTTGAAGAAGAAACTCCATGAAAGAACGAGCCACACGCATCAGGACACGATGAATAGGTGCGGGTATTGTACTGAAGCGTTCAAAGACTATAGGAAGAAGGAGGCCCATTTGGCCAAGGCACACGGTGTCAAGATCCTTACTCCCGTCTGCCAGGCTTGCGATAGAGTGTTCAGTAACAGAAAACTACTAAACATTCACGTTAAGAGAGACCATCTATTGGAACGTCCGCACAAGTGTTCGGAATGCGAAATGACGTTCTTCTCCACGACTGGCCTCAAGAATCACATGGTAAAACACACCGGGTCCAGAGAGTTTCAGTGTTCGGTGTGTCTCAAGTCGTTTGGGAGGAAGAAGACTCTAAATTCTCATATGAGGATACATGATGCAGAGAAACGGCACAAATGCGAGCATTGTGGACAAGCGTTCGTTCAAAAGTGTAGCTGGAAAGGCCATATGCGGTCTAAACATGGGGAAATTGTATAA
- Protein Sequence
- NEENVAFLEINVEAKPLAKKTGAKKEKAVLKKRMKEVHKHRHNLTEILNHTNATPILRQGRIGYMCNSCMQEFPEPGDLKKHTLDSHTAVGNQASFFKNSTMYEYCIKLDITALKCNICHHNIQSLEELMDHLKNTHQKTIYSDIKNHILPFKFESEQLTCCLCPTSFDKFKVLQEHMHKHYRNYICDICESGYVNQGCLARHKYIHKLGTFPCEYCPKIFDTKVKKIMHQRSNHTHKNSMIKCGYCDAGFRDLYLKEAHLTEVHGIKPRQNKCNACGKCFLTPAKLRVHTQRHHLLLRRHKCTQCDMEFYDSGCEENVAFIEIKVEPTPLFKKEGGKKKKAVLKKCVKEGHKHRHNLSEILNNTNATPILRHGRIGYMCHSCMQEFPEAGDLKKHTLESHPAVGNQASFFKNTTMYEYCIKLDITALKCNICGNNIQTLEKLMEHLKNTHQKTIYSDIKNHIMPFQFESEQLTCCLCPTSFEKFKVLQEHMHKHYRNYICDICESGYINQGCLKRHKYIHKLGTFPCEYCPKIFDTKVKKMMHQRSNHTHKDSVSKCGYCDKGFRDLYLKEAHLTEVHGIKPRQNKCNACGKCFLTPAKLRVHTQRHHLLLRRHKCTQCDREFFASDTLKRHMVTHTGLKEFKCEHHNRVAKEIKLEATTVASEVKTELPKASRTEVIKHRMNIKEILLCTNATPIRRYGGIGYTCCYCDKQYVAPEELKIHTQETHTDVNLANFMKHMNMSEYVVKLDVTNLTCNLCNTTINSLENLFQHLKTQHERKIYTDIQNHIFPFQFGSGMLKCMICSNAFNKFRVLANHMHLHYRNFICTVCDSGFVNRNALAQHSLKHNTGVFTCDYCPKSYSTQLKKKLHERTSHTHQDTMNRCGYCTEAFKDYRKKEAHLAKAHGVKILTPVCQACDRVFSNRKLLNIHVKRDHLLERPHKCSECEMTFFSTTGLKNHMVKHTGSREFQCSVCLKSFGRKKTLNSHMRIHDAEKRHKCEHCGQAFVQKCSWKGHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -