Ndro004915.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990188.1:3645749-3653655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 44 0.095 6.5 7.7 3.6 1 23 53 75 53 75 0.94 2 44 0.78 53 4.8 0.0 2 23 103 125 102 125 0.93 3 44 0.072 4.9 8.0 0.7 2 23 146 168 145 168 0.96 4 44 0.0013 0.087 13.5 0.7 1 23 173 196 173 196 0.97 5 44 0.018 1.2 10.0 0.9 1 23 200 223 200 223 0.93 6 44 0.014 0.98 10.2 1.3 2 23 226 248 225 248 0.96 7 44 0.00088 0.06 14.1 1.1 2 20 254 272 253 274 0.93 8 44 1 68 4.5 3.4 1 23 319 342 319 342 0.92 9 44 2.3 1.6e+02 3.3 0.3 2 23 371 393 370 393 0.94 10 44 0.00034 0.023 15.4 0.1 1 23 415 438 415 438 0.95 11 44 0.00011 0.0072 17.0 0.4 3 23 445 466 444 466 0.94 12 44 0.0024 0.16 12.7 0.1 1 23 472 495 472 495 0.94 13 44 3e-05 0.002 18.7 0.4 2 23 501 523 500 523 0.96 14 44 2.5 1.7e+02 3.2 1.8 1 10 527 536 527 539 0.89 15 44 1.5 1e+02 3.9 0.5 2 23 557 578 556 578 0.95 16 44 0.11 7.6 7.4 1.6 1 23 584 606 584 606 0.94 17 44 0.0005 0.034 14.8 1.2 1 23 648 670 648 670 0.97 18 44 0.1 6.8 7.6 0.0 3 23 699 720 697 720 0.89 19 44 0.0087 0.59 10.9 2.0 1 23 740 763 740 763 0.96 20 44 0.0034 0.23 12.2 1.5 1 23 768 791 768 791 0.96 21 44 1.8 1.2e+02 3.6 0.1 1 23 796 819 796 819 0.96 22 44 0.00093 0.063 14.0 2.0 2 23 822 844 822 844 0.96 23 44 0.052 3.5 8.5 0.7 2 22 852 872 851 872 0.95 24 44 0.053 3.6 8.5 2.1 1 23 927 950 927 950 0.96 25 44 1.3 92 4.0 0.0 2 23 1023 1046 1022 1046 0.93 26 44 2.6e-05 0.0018 18.9 0.3 3 23 1053 1074 1052 1074 0.94 27 44 0.015 1 10.2 4.1 2 23 1079 1101 1078 1101 0.93 28 44 0.00081 0.055 14.2 1.3 1 23 1106 1129 1106 1129 0.94 29 44 2.5e-05 0.0017 18.9 5.3 1 23 1133 1156 1133 1156 0.97 30 44 0.00064 0.043 14.5 0.3 2 23 1163 1184 1162 1184 0.96 31 44 0.00047 0.032 14.9 1.0 1 23 1223 1245 1223 1245 0.97 32 44 0.16 11 7.0 0.0 2 23 1273 1295 1272 1295 0.90 33 44 0.0087 0.59 10.9 2.0 1 23 1315 1338 1315 1338 0.96 34 44 0.0034 0.23 12.2 1.5 1 23 1343 1366 1343 1366 0.96 35 44 1.8 1.2e+02 3.6 0.1 1 23 1371 1394 1371 1394 0.96 36 44 0.052 3.5 8.5 0.7 2 22 1427 1447 1426 1447 0.95 37 44 0.08 5.4 7.9 4.1 1 23 1502 1525 1502 1525 0.96 38 44 0.86 59 4.7 0.0 2 23 1598 1621 1597 1621 0.94 39 44 3.6e-05 0.0025 18.4 0.1 3 23 1628 1649 1627 1649 0.94 40 44 0.015 1 10.2 4.1 2 23 1654 1676 1653 1676 0.93 41 44 0.001 0.069 13.9 2.0 1 23 1681 1704 1681 1704 0.94 42 44 2.5e-05 0.0017 18.9 5.3 1 23 1708 1731 1708 1731 0.97 43 44 0.00018 0.012 16.3 0.2 2 23 1738 1759 1737 1759 0.96 44 44 2.4e-05 0.0017 19.0 1.3 1 23 1765 1787 1765 1787 0.97
Sequence Information
- Coding Sequence
- ATGCATTGCGACCACGACAAGGGCGGCAATACATTTAGAGACAAGTCTGATCCCAAATCAGAGACGAAAAAGCACAGTGCAAACCACGTGAGGAGGCAGAACCTTCAGATATTGTTCAACAATACCACCCTTATACCCTTCAAATGGAGGAATAAGTTCTTGTGCTTCTATTGCGGTGACGATTTCAGCTCCCACAGTGCACTTGTAAAACACACACACAGCCACGGCAAGTGTTCAGACAAAGACAGGGCTATTAAGCTGGTCAAATCGTCAGACAGCGAGATCAAAATCGATGTATCGGTAATCGTTTGCGAAATTTGCTCGGTGTCATTCGATTCGTTCGATGTTATCGTGAATCATTTGAAAATCGACCACAATCTGCATTTCAACAAAGATGTTGAAATGATGATCAGTTTATACAGACTTGTGGACTTGAAATGCTTGCTCTGTAACGATAGCTTTGATTATTTCACTAAACTAATCAGTCATATGAATACCATTCATCCTAGTAATAGTTTCTTTTGCGCCGAATGTGAACAGAGTTTCAATAAAAAGAGAGATTTGGACGCTCATGCGAGGACGCGTCATAAGAAAGAATTCTCATGCACAAAGTGCGCTGTGAATTTCATGACAAACGCCGAGTTGCAGAGACACAGGTTTAATGATCACATCTCGTCTTGTAATTTATGTTTCAAGAGTTTTCCTACGTTAAATAAACGCTTGATACATATGAGACGAGAGCATACATCAGACCAAACTCGATGCGGATTCTGTCATAAGACGTTTTCCACTAAACAGGCACTTCTACGCCATGCAGCGAAATGCGACTCCAATGAAAAGGTCATCGTCATAAATGACAATGACAAAAGGAATTCAGTAAAAGAATTGAGGAACAACATAGCGTCTATTGTTAACTTAACCACAGCGGTGCCTTTCAAATTTTACATGAACAAATTCAGATGTTTCTACTGCACGAAAGATTTCTTGAAATGTGACGATTTAAGGGATCACACTAGCGCGGAACATCCTGTATGCGATGTGACATTCAAATCTATGAAGCTGCGCAACAGATACGACGGTGTGCAAATTAAAATTGACACGTCATCGCTCTCTTGCAAACTGTGCTATGAGAGTTTGCAAGACTTGACCGATTTAGTGGAGCATTTCAAATCGGAACACAAGACTAGCCTCAATAGTTCAGTAATCACTGATGTACAGTCTTTCAAATTAGTTACCGACCACTTTCCCTGTCCTTATTGCGGTGAAGTGTACAGATACTTTGGCTTGCTTCTCAAACACGTTAGTGTCACGCACACAGACAACAAAAATATATGCGTTTACTGCGGCAAATCGTTTAGGACCGACCCCAATTTGCGTTCGCATATCTCGCAAAGGCACAGAGATGCCGGGAGATACAAATGTAAGATCTGTGATCTTCTGTTTTCCACGAAAACCGCTGTGAATATACATTTAGGCGTTGTTCACGGTGACAAGTTTGTAAAATGCTCAGTGTGCCCTGAGAGGTTCACGTCACAATACTTGATGCAACGTCATATGCTGGTATCGCACGGAACTGGGCACAAATGCGAGCACTGCGGGAAGCTCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTGAAAGAGAAGAATGTGGAGTGCTCGGTGTGCTTTGACAGGTTCTTTGATGCCCAGCGCTTGAAGATGCACATGGTAAAACATATCGGCGAAAGGAACTTCCATTGCGATGTTTGTGGCAAGAAGTTTTTGTGGAAAAGGAATCTGAGGGGACATATGGTGTCGCACAATAGGGATAACGATGAGTACCGCCCGCGCACAAATGATGGCTGTACATCAGAGCGTAGGCGGCAAAACTTGAAAATTATATTCAACAACACCACCGTCATGCCATTTAAATGGCGCGGCAATTATATATGCTTCTATTGCGGCATAAGTTACACAGATTATACAGAATTTAAAAAACACACCGCATCTCACGGCCATTGCTCGTCCACAGACTATGCACTTAAAAGAATCAAAGGTAGCCACATTGAAATTAAAATTGATGTATCTGATATCAATTGCGATATTTGTAATGAACCCTTCTCTCGATTTGAGGAGATTGTCGATCATTTAATCGGTAAACACGGCTTAGAGTACGACAAGAGCACCGATACACCTTTCCAGGAGTATCGCTTGGTGGACTTTCGATGTCTATATTGTGAGGAGCAGTTCTCTTTCTTCGGCCATTTGGTCAAACATGTGAACAATGTACATCCACAGAACTGCTTCATTTGCGACGATTGTGGCGTCACTTTCAATAAAAAGAGAGATCTGGCGTGCCATATTCGTAATTATCATAAACAAGGAGGCTATCCGTGCGATTTATGTCTCCAAAACCTAGACTCGCTGTTGTCTCTACGTGTACATAGGAATAAAGTTCATTTTAGAAGATGCAACAACTGTCATCTCAAATTTTCGTCACTGACGCTTCTACAAAAGCACATAGAAATCGATCATCCAAACACAAATGGAGATATAAAATGCAGCTATTGCTCCAAAGAGCTTCACTCCTCTATAGGGTTGAGACAGCATATCCGTAAATGTAAGGTGAAGCGTGTCTCCCAAGCAGACCCTGACCCGCCGTTGGGTATCACCGACGTTGGAGATCAGCCACAAAAGAATCAGAATTTACAACAAATGCGACAGAATATACAGTGTGTGCTGAATATGTCTACCGCGACACCTTTTAAATTCTTTGCGAAATATTCCTGTTTCTATTGCTCGAAGAAGTTTAACGAGTTCGTTGAGGTGAAGCAGCATACAAATTCGGAACACCCGGTGTGTGATCTCAAATCTAAATCCATGAAGAAGTGCAAAGGTTCTAGGGTGTCTGTTAAAATCGACGTTGCCGATATAGCGTGCAAGCTCTGCACACTACCCGTGGACAATTTGGATGTACTAATCGATCATCTGATATCTGAACACAAAGCGAAATACGACAAATCAATTCAAGGTTGTTTGGAACCATTTCAAATCACAAAAGATAGCATACCATGCCCGCTTTGTCCCGATCGCGTGTTCCGATACTTCGGAATCTTGCTGCGGCACATGAACTCTGAACACACTAATAATAACAGAATCTGCGATTTCTGTGGCCGTAGTTTCCGCAACGCCACTAATTTGAAAGTCCATTTAAGTTATGCCCACGCTGGCTCCTGCGAATGTGACGTTTGCGGCACTAAGTTTAAGAACCAGTGGTGTCTCGGCCGGCACAAAGCGAAAACTCACGACGTTAAAGATTACAAGTGTCCGAAATGTCCCGAGCTGTTCAAATCGCCGTACCACAAGCAGAAGCATTTGATTGAAGTCCATAATATTGGGCACAAATGTAGCTACTGCGATAAAATGTTCACTAGGAATTCGTTTATGAAGGATCACATTCGTAGGACGCATTTGAAAGAGAAGAATGTACCATGTTCGGTATGCAATGAAAAGTTCTTTGACAACTACTTGCTAAAGATGCACATGGTGAAACACGACGATAACCACCCCCCGCCCATAAATGTCGGCTGTACATCAGAGCGTAGGCAGCAAAACTTGAAAATTATATTCAACAACACCACCGTCATGCCATTTAAATGGCGCGGCAATTATATATGCTTCTATTGTGGCATAAGTTACACAGATTATACAGAATTTCAAAAACATACCGCATCTCACCGCCAATGCTCGACCACAGATTATGCTCTTAAAAAAGTCAAAGGTAGCCACTTTGAAATCAAAATTGATGTTTCTGATATCACTTGCGATATATGCAACGAACCTTTTGCTCGATTTGAGGAGATTGTCGATCATTTAATCGGTAAACACGGCTTAGAGTACGACAAGAGCACCGATACACCTTTCCAGGAGTATCGCTTGGTGGACTTTCGATGTCTATATTGTGAGGAGCAGTTCTCTTTCTTCGGCCATTTGGTCAAACATGTGAACAATGTACATCCACAGAACTGCTTCATTTGCGACGATTGTGGCGTCACTTTCAATAAAAAGAGAGATCTGGCGTGCCATATTCGTAATTATCATAAACAAGGAGGCTATCCGTGCGATTTATGTCTCCAAAACCTAGACTCGCTGTTGTCCTTACGTGTACATAGGAATAAAGTACATTTTAGACGATTCAACAATTGTAATCTCAAGTTTTCGTCACTGACGCTTCTACAAAAGTACATAGATATCGATCATCCAAACACAAATGGAGATATAAAATGCAGCTATTGCTCCAAAGAGCTTCACTCCTCTATAGGGTTGAGACAGCATATCCGTAAATGTAAGGTGAAGCGTGTCTCCCAAGCAGACCCTGACCCGGCGTTGGGTACCACCGACGTTGGAGATCAGCCACAAAAGAATCAGAATTTACAACAAATGCGACAGAATATACAGTGTGTGCTGAATATGTCTACCGCCACACCTTTTAAATTCAAGGCGAAATATTCCTGTTTCTATTGCTCGAAGAAGTTTAACGATTTCGTTGAGGTGAAGCAGCATACACATTCGGAACACCCGGTGTGCGATCTCAAATCTAAATCCATGAAGATGTGCAGTGGTTCTAGAGTCTCCGTTAAAATTGACGTTGCCGATATAGCGTGCAAGCTCTGCACACTACCCATGGACAATTTGGATGTACTAATCGATCATCTGATATCGGAACACAAAGCGAAATACGACAAATCATTTCAAGGTTGTTTGGAACCATTTCAAATCACAAAAGATAGTATACCATGCCCGGTGTGTCCCGATCGCGTGTTCCGATACTTCGGAATCTTGCTGCGGCACATGAACTCTGAACACACTAATAAAAACAGAATCTGCGATATCTGTGGCCGTAGTTTCGGCAACACCAGTAATTTGAAAGTCCATTTAAGTTATGCCCACGCTGGCTCCTGCGAATGTGACGTTTGCGGCACTAAGTTTAAGAACCAGTGGTGTCTCGGCCGGCACAAAGCGAAAACTCACGACGTTAAAGATTACAAGTGTCCGAAATGTCCCGAGCTGTTCAAATCGCAGTACCACAAGCAGAAGCATTTGATTGAAGTCCATAATATTGGGCACAAATGTAGCTACTGCGATAAGATGTTCACTAGGAATTCGTTTATGAAAGATCACATTCGTAGGACGCATTTGAAAGAGAAGAATGTACCATGTTCGATATGCAATGAAACGTTTTTTGACAACTACTTGCTGAAGTTGCACATGGTAAAACACGACGGTGAGAGGAAGTTTAATTGTACAGTTTGTTCCAAGGCGTTTTTGAGAAGCAGCAATTTGAAGCGCCATATGGATATGCATAAGAAATACGGAAACGTATAA
- Protein Sequence
- MHCDHDKGGNTFRDKSDPKSETKKHSANHVRRQNLQILFNNTTLIPFKWRNKFLCFYCGDDFSSHSALVKHTHSHGKCSDKDRAIKLVKSSDSEIKIDVSVIVCEICSVSFDSFDVIVNHLKIDHNLHFNKDVEMMISLYRLVDLKCLLCNDSFDYFTKLISHMNTIHPSNSFFCAECEQSFNKKRDLDAHARTRHKKEFSCTKCAVNFMTNAELQRHRFNDHISSCNLCFKSFPTLNKRLIHMRREHTSDQTRCGFCHKTFSTKQALLRHAAKCDSNEKVIVINDNDKRNSVKELRNNIASIVNLTTAVPFKFYMNKFRCFYCTKDFLKCDDLRDHTSAEHPVCDVTFKSMKLRNRYDGVQIKIDTSSLSCKLCYESLQDLTDLVEHFKSEHKTSLNSSVITDVQSFKLVTDHFPCPYCGEVYRYFGLLLKHVSVTHTDNKNICVYCGKSFRTDPNLRSHISQRHRDAGRYKCKICDLLFSTKTAVNIHLGVVHGDKFVKCSVCPERFTSQYLMQRHMLVSHGTGHKCEHCGKLFXXXXXXXXXXXXXHLKEKNVECSVCFDRFFDAQRLKMHMVKHIGERNFHCDVCGKKFLWKRNLRGHMVSHNRDNDEYRPRTNDGCTSERRRQNLKIIFNNTTVMPFKWRGNYICFYCGISYTDYTEFKKHTASHGHCSSTDYALKRIKGSHIEIKIDVSDINCDICNEPFSRFEEIVDHLIGKHGLEYDKSTDTPFQEYRLVDFRCLYCEEQFSFFGHLVKHVNNVHPQNCFICDDCGVTFNKKRDLACHIRNYHKQGGYPCDLCLQNLDSLLSLRVHRNKVHFRRCNNCHLKFSSLTLLQKHIEIDHPNTNGDIKCSYCSKELHSSIGLRQHIRKCKVKRVSQADPDPPLGITDVGDQPQKNQNLQQMRQNIQCVLNMSTATPFKFFAKYSCFYCSKKFNEFVEVKQHTNSEHPVCDLKSKSMKKCKGSRVSVKIDVADIACKLCTLPVDNLDVLIDHLISEHKAKYDKSIQGCLEPFQITKDSIPCPLCPDRVFRYFGILLRHMNSEHTNNNRICDFCGRSFRNATNLKVHLSYAHAGSCECDVCGTKFKNQWCLGRHKAKTHDVKDYKCPKCPELFKSPYHKQKHLIEVHNIGHKCSYCDKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLKMHMVKHDDNHPPPINVGCTSERRQQNLKIIFNNTTVMPFKWRGNYICFYCGISYTDYTEFQKHTASHRQCSTTDYALKKVKGSHFEIKIDVSDITCDICNEPFARFEEIVDHLIGKHGLEYDKSTDTPFQEYRLVDFRCLYCEEQFSFFGHLVKHVNNVHPQNCFICDDCGVTFNKKRDLACHIRNYHKQGGYPCDLCLQNLDSLLSLRVHRNKVHFRRFNNCNLKFSSLTLLQKYIDIDHPNTNGDIKCSYCSKELHSSIGLRQHIRKCKVKRVSQADPDPALGTTDVGDQPQKNQNLQQMRQNIQCVLNMSTATPFKFKAKYSCFYCSKKFNDFVEVKQHTHSEHPVCDLKSKSMKMCSGSRVSVKIDVADIACKLCTLPMDNLDVLIDHLISEHKAKYDKSFQGCLEPFQITKDSIPCPVCPDRVFRYFGILLRHMNSEHTNKNRICDICGRSFGNTSNLKVHLSYAHAGSCECDVCGTKFKNQWCLGRHKAKTHDVKDYKCPKCPELFKSQYHKQKHLIEVHNIGHKCSYCDKMFTRNSFMKDHIRRTHLKEKNVPCSICNETFFDNYLLKLHMVKHDGERKFNCTVCSKAFLRSSNLKRHMDMHKKYGNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -