Ndro015555.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990176.1:6468672-6470483[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2e-11 1.9e-08 34.1 0.0 3 38 16 51 14 56 0.93 2 3 9.4 5.5e+03 -2.6 0.0 22 31 175 184 175 187 0.79 3 3 7.9 4.6e+03 -2.4 0.3 1 14 395 408 395 411 0.85
Sequence Information
- Coding Sequence
- ATGTCTACATCCTACAAATACAACAAAAGAAAGAAGTGGGAGAAGGAGGATATGTCCGCTGCGATTATCGCTGTTCGAGAAAAGAGAATGGGATACTTGAAGGCAGCTAAACACTTTAACGTTCCCAGGTCTACCCTCTTTAGATTTGTTAATGATAATGACTCCTCGACTGAATCTGTAATGAATAAAGTTATTGGTCGAAGGCCAGTTTTGGGTACAGATATTGAAAACATGCTGGTTGAGTACATATTAACAATGGAGAATAAATTTTATGGACTGACCAGAATGGATTTGCGTCGGTTGGCATATCAATTAGCTATAAAAAATAATATTCAAAACGCTTTTAAGGACGGATTTGCTGGAAGATACTGGCTGAAGGGATTTTTAAAACGACATAAGGAAATTTTGTCCATAAGACAGCCAACTGCAACGTCTCAAGCAAGGGCCAATGGATTCACTAAAGAAAGAGTGGACGAGTTCTACGATAATCTTGACAAAATCCAGGCTGATAAGCCTTTCCCTGCTGCGCGCATATTCAACGTTGATGAGAGTGGTCTCTCTATAGTTCAGAGTAAAATTCCAAAGATCATTGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAAATATAGAATTGATAGATCTAGCGAAACAGAATTATGTGACAATTCTATCTTTGCCACCTCATTGCACGCACAAAATTCAACCCCTTGATCGTACTTTCATGGGTCCTTTAAAATGTTACTACAGTGAAGAAGTCAGGGTGTTTCTCCGGGAACATAACAGACCTGTAACACCATATGATGTTGTTGAGCTATTTGGGAGAGCCTACATCAAGTGCCAAACCGCCGAAATTGCTGCAAATGGTTTTAAAATTGGTGGAATATATCCATTTAATAGAAATGTATTTACTGAAGCTGATTTCATAGCCGCTGCTGCTGATGTTTCAGAGGATGAAAACCCTCAAACGAGTCCAAACCCGCTCGACTCACCCGTGGCCACTTTTCGGCGATTGGAGAATTTCGATGAAGCTCAACCAGGGCCATCAGGAATCCAATCAATAGTTACTCCCTCTCAAATTTCTCCCGTGCCAATAGTAAAAAAGAGAACGAGCAATAGAGGCCGTAAGCCAGCAAAATCCGCAATAATTTCAAGTTCCCCTTATAAGAAAGACCTTGAGAATGCACAATTTAAAAAGTCGGGAAAGGCGAAGAAAGCACAGAAAAAAAATGTTAAAGGAAAAAGCAAGAAGAATGTAACAAAAAACACAAATGAGAGAAGTATTACAGAAAGTGAGTCATCAGATTCAAATCCTGTTATCTATGGAAATTACTCAGACTCATCCGACGATATAGCAATGAGAAATGAGTCTGCAGTCCCAACTGATGAGGATGCCGAGTGTTTTTTCTGTAATGGAAAATATAGTGAGGATAAAAGGGGTGAAGAATGGGTAAAGTGCTTAATTTGTGAATTGTGGGTTCACGGAGATTGTGGTGGTTATGAATCTGGTATTTATATATGTGATTACTGCAAGAATTAA
- Protein Sequence
- MSTSYKYNKRKKWEKEDMSAAIIAVREKRMGYLKAAKHFNVPRSTLFRFVNDNDSSTESVMNKVIGRRPVLGTDIENMLVEYILTMENKFYGLTRMDLRRLAYQLAIKNNIQNAFKDGFAGRYWLKGFLKRHKEILSIRQPTATSQARANGFTKERVDEFYDNLDKIQADKPFPAARIFNVDESGLSIVQSKIPKIIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNIELIDLAKQNYVTILSLPPHCTHKIQPLDRTFMGPLKCYYSEEVRVFLREHNRPVTPYDVVELFGRAYIKCQTAEIAANGFKIGGIYPFNRNVFTEADFIAAAADVSEDENPQTSPNPLDSPVATFRRLENFDEAQPGPSGIQSIVTPSQISPVPIVKKRTSNRGRKPAKSAIISSSPYKKDLENAQFKKSGKAKKAQKKNVKGKSKKNVTKNTNERSITESESSDSNPVIYGNYSDSSDDIAMRNESAVPTDEDAECFFCNGKYSEDKRGEEWVKCLICELWVHGDCGGYESGIYICDYCKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073540; iTF_01073545;
- 90% Identity
- iTF_01073540; iTF_01073545;
- 80% Identity
- -