Basic Information

Gene Symbol
Kdm5
Assembly
GCA_905147325.1
Location
LR990185.1:500831-553335[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 2.3e-24 6.2e-21 74.8 0.0 2 89 101 184 100 184 0.93
2 11 2.6 6.9e+03 -2.3 0.0 36 68 1367 1407 1343 1424 0.72
3 11 3.1 8.1e+03 -2.5 0.0 39 68 1423 1460 1408 1473 0.67
4 11 2.6 6.9e+03 -2.2 0.0 36 68 1473 1513 1438 1526 0.72
5 11 3.2 8.5e+03 -2.5 0.0 42 68 1532 1566 1521 1583 0.67
6 11 3 7.8e+03 -2.4 0.0 37 68 1580 1619 1562 1632 0.69
7 11 2.8 7.3e+03 -2.3 0.0 36 68 1632 1672 1609 1686 0.71
8 11 2.8 7.5e+03 -2.4 0.0 36 68 1685 1725 1665 1739 0.70
9 11 3 7.8e+03 -2.4 0.0 40 68 1742 1778 1728 1795 0.68
10 11 3.2 8.4e+03 -2.5 0.0 40 68 1795 1831 1782 1844 0.66
11 11 3.5 9.2e+03 -2.6 0.0 36 66 1844 1882 1822 1895 0.70

Sequence Information

Coding Sequence
ATGGGAAAATGTGACGAAGCTAATGTCGAAGTTAGCATGGGGGACTCGGCGTCCCCCATGAAACCTGATAACTTTACGTTCACCCCGCCTCCGGAGGCTCCAGTGTTCGAGCCAACGCCAGAAGAATTCCTGGACCCCCTCGCGTACATCAGTAAAATACGACCAATCGCCGAGAAATCTGGCATTTGCAAGATAAAACCACCAGCGCACTGGCAACCACCCTTCGCGGTGGACGTGGACAGACTGCGGTTCACGCCCAGGATACAGAGACTGAACGAGTTGGAGGCAATCACTCGCGTGAAACTCAACTTCCTCGACCAGATCATCAAGTTCTGGGAGCTGCAGGGCTCCGTGCTGAAGATACCGACGGTCGAACGGAAACCACTTGACCTATATGCTTTACATAAGATTGTCAAGGAAGCAGGCGGATTCGAGGTATGTTCCTCGGAGCGCAAATGGTCGAAGATTGCTCGCCGCATGGGCTACCCGCAAGGCAAGGGGATCGGGTCTATCCTCAAGAACCATTACGAGAAGATCCTGTACCGATATGACGTGTTCAAGAGCAACGGGGCGGTGGGGGACAAGGAGACTAAAATCGAAGTGAAAGGCGAGCAGACTCCAGAGAAGGCCACGACGACTCGCAGCCGGTCGGCCAGCAAGTGCCCGCCCACCGCGGCGACTCCGCCCCCGGCGCGCCGGTACAAGGCGGAGCCCGAGCCGGCGGCCGAGGGCAGCCACACCGAGGGCGCCCTGGCCGGGGTGGACGACGACCGGAAGCTGAGGACTCCGGTCAAAGAGGAGAGCCCGGAGACTCGACGGAGTCCGCGCGAGAACAAGTGGATGTCTGCGGGCGGCAGCTGCGGCGCGCGGTCGCGAGTGACGCGCGCCACGCGGCTGCGCGAGCACCGCATGTCCAACATGACCGTGTCCGTGACGCCCGCGCCCGCGCCGCCGCCGCCGCACGCGCCGCACCCCGACGACCCGTTGGCGAAGTACATGTGCCACGTGTGCGGGCGCGGAGACGTGGAAGAGCAGATGCTGCTGTGCGACGGCTGCGACGACTCCTACCACACCTTCTGCCTGCTCCCCCCGCTGGCGGACGTGCCCAAGGGGGACTGGCGCTGCCCCGTGTGCCTGGCCGAGGAGGTGTCAAAGCCGACGGAAGCGTTTGGGTTCGAGCAGGCGACGCGCGAGTACACGCTGCAGCAGTTCGGCGAGATGGCCGACCAGTTCAAATCGGACTACTTCAATATGCCCGTACATATGGTGCCAACGTCGACAGTGGAGAAGGAATTTTGGCGAGTGGTGTCCTCAATCGACGAGGACGTGACGGTCGAGTACGGCGCCGACTTGCACTCTATGGACCACGGCTCAGGGTTCCCGACCAAGTCGAGCGCGCACCTGTACCCCGGCGAGCAGCAGTACGCGGACTCCAGCTGGAACCTGAACAACCTGCCCGTGCTGGAGGGCTCCGTGCTCGGACACATCAACGCCGACATATCCGGCATGAAGATCCCGTGGCTGTACGTGGGCATGTGCTTCGCCACGTTCTGCTGGCACAACGAGGACCACTGGAGCTACTCCATCAACTACCTGCACTGGGGCGAGCCCAAGACATGGTACGGCGTGCCGAGCTCCAAGGCGGAGCAGTTCGAGGCGGCCATGAAGGCGGAGGCGCCCGAGCTGTTCCAGCTGCAGCCCGACCTGCTGCACCAGCTCGTCACCATCATGAACCCCAACCTGCTCATGAAGGCGGGCGTGCCCGTCTACAGAATGGACCAGCACGCCGGTGAATTCGTGATCACGTTCCCGCGCGCTTACCACGCTGGGTTCAACCAAGGATACAACTTCGCCGAAGCCGTCAATTTCACACCCGCTGACTGGTTGAAAATGGGTCGCGAATGCATTGGGCACTACTCGACGTTACGGCGCAACTGCGTGTTTTCGCACGACGAGCTGGTGTGTAAGATGGCGCTGGAGGCGGACTCCCTCAGCCTCACCGTGGCGCTCGCCGCCTACAGGGACATGCGGACCATGCTGCACGACGAGAGGAAGCTGCGCAAGGGTCTGCTGGACTGGGGCGTGACGGAGGCGGAGCGCGAGGCGTTCGAGCTGCTGCCGGACGACTCGCGGCAGTGCACGCTGTGCAAGACCACGTGCTTCCTGTCCTGCGTGTCCTGCGCCTGCGCGCCGCGCGTCGCCTGTCTGCGCCACTACCGCCAGCTCTGCCGCTGCGCGCCGCACCACCACAAGCTCAGGTATCGCTACACACTGGACGAGCTCCCAGCGATGCTGGAGAAGCTGAAGAAGAAATCGGAACAGTTCCGGGAGTGGGCCGAGGCGGTGCAGAACGCGCTCGACCCGGACACGCCCAAGACTTGCGACCTGGACGGGCTGCGGGCGCATCTGAAAAGGGCACACGACTTGAAGATGCACAAGACGGAGCTGGTCCGCGCGCTGGAGACGGCCGTGGAGGACGCGGAGAAGTGCGCGTCCGTGATCCAGCAGCTGGACCTCAACAAGATGCGCACGCGCACGCGCCACCACGACCCCAAGTACCGCCTCACCATCCACGAGCTCACGCTCTTCGCCGCGGAGATCGACGGCCTCGCCTGCGTGCTGCCCGAGGGTTCGGCAGTTAAAGAGGTGTTGCGGCAAACGGCGGAGTTCGAGACCCGCGCCACAGAACTGCTGAACAATGATTTGGAGAAAACAGATCCGGCGTACGTCCGGGAACTGGAGGAGGTGGCGGAGCTGGGCGCGCGGCTGTGCATCGTGCTGCCGCAGCTGGCGCCGCTGCGCGCGCGGCTGGCGCAGGCGCGCTGGCTGGCGCGGGCCCGCGCGCGGCGCGGCGCGGCGCCGGCGCTGGCGCCCGCGGCGCTGGAGCGGCTGCTGCTGGACGCCGCCGAGCTCGTGCCGCACCACGCCGTCGAGCGAGAGCGCTCGCTGCTATACAAACTTAAAGCCCAAGTGGAAGATTGGGAGAGCCGCGCCCGCGTGGTGCTGATCGACACGTCCGCGCCGCGCTCGCCCGCGCCGGACACGGAGCCGCAGTACACGACGCTGGCCGAGCTGGACGCGCTGCTGGCCGAGGGGGAGGACGTAGAGGCCGCTCTACCCTCCTACCACGCGCTGCAGACCGCCGTCAGCCACGCTAGAGACTGGCTAGCTAAGGTGGAAGAGATGCAATCCAAAGAGCTGTACCCGTACATGCACAGCGTGGAGGCGGTGGTGCGGCGCGGCGCGCAGATCCCGCTGGCGCTGTACGAGAAGGACCAGCTGGCGCGCGCGCTGCACTCCGCCAGGGAGTGGAAGCGCGGCGCCGCAGAGATGTTCCTTAAGAAGAACTGGGCGCATTCGCTGCTAGAGGCGCTGTCGCCGCGCGGTGAAGCCGCGGAGGGCGGCGCGGCGCGGCGGCGGCGGGCGGGCGCGGGGGCGGGGGCGGGCGGCGGCGCGGGGGCGGGCGCGGGCTCGCCGCCCCCCTCCTCGCTGGAGGCGGGCCTGTTCCTGCGCAACTTCAGCGAGGACTCCACGCCCACCGAGATCGTCGCCGCTTTCAAGCACGCCGAGCAGCGGGAGTTGCACGCTATCAAGGAGCTCAGGGCTCGCAACATGCGCAAGGAGGTTCGCGCGCCGCCCTCGGCGGCCGTCACCTTCTGCGTGTGCCAGAAGCGGCAGTACGGCGTCATGACGCAGTGCGAGCTCTGCAAAGACTGGTTCCACGCGTCGTGCATAGCGGCGGCGGCGGAGGAGCGCGCGGCGTCCCCGGCGCCGGGGGCGGGGGCGGGGGCGGGGGTGGGGGCTGGGGCGGGGACTGGAGCGGGGACTGGAGCGGGGGCCGGGGCGGGGGCTGAGCCCAAGTTCCTGTGCCCCGACTGCACGCGCACCAAGCGGCCCCGCCTCGACCGCATCCTGGCTCTGCTGGTGTGGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGAGGCGCTGCAGTGCGTGACGGAGCGCGCCATGGCGTGGCAGGACGCGGCGCGCGCGCTGCTCGCCAGCCCGCTGCTGGCGCAGCTGCCGCCGCACGACCGCGCCGCACAAGCGCAGGTGAGGGAGCTGCAGAACCTGCAGGTGCGGCTGGCGGAGGGCGATGGGAGTCTGCGGCTGGTCTACCACGTCCTGCGTCTGGCCTGCGCAAACAGGGAGAAAGCGGACAAACTGAACGCAGAATTAAAGAAGGCGACAGGACGTGCGCACGATTCACATAGTATGTCACAAAATCCGAGGTCGTCGGCGTCGGTGGAGCACGCGTACAGCGCCACGCCGCGGGCGGGCGCGGGGGCGGGCGCGGGGGCGGGGGCGGGCGCGCGTCTGGCGCCCGGCCTGCTGCAGAAGCTGGAGGACCTCATGCTGGAGGGGGACCTGCTGGAGGTGCGGCTGGAGGAGCAGGCTACGGTGTGGAGCGCGGTGCTGGGCGCGCGCGCGGCGGACGGGCGGCGCGGCGCGCGCGTGCTGGACGCGGGCCGCCGCAAGCGCCGCACGCGCACGCCGCGCCACCACCACCAGCTCAAGCGCACGCGCACCAGGCACCACCACGGTACAGTGGCGGCTAAACCCACACTAAAACGTGGAACAGCGACCACAACAAACTATCTCAATAGGAAACAGGGTGTGTCGTCGGGCTCGGGGCTGATGATGCGCAAGCACTACATGGCGCGGCAGGAGCGGCGCAAGCGCGGCCTGGCGCAGCCCGCGCGCGGCAAGCACCCGCGCCAGCCGCGGCTCGGGAGCACGCGCGGCGGCGGGGGCGGCGCGGGCGGCGCGGGGGGCGCGGCGCGGGGCAGCAGCTCGTCCTCCGCCTCCTCCGCGGAGGACGAGGAGGACTGCGCCGCCGCCGACTGCCTCAGGCCCACCGGCAAGGAGGTGGACTGGGTGCAGTGCGACGGCGGCTGCGACCAGTGGTTCCACATGCACTGCGTGGGGCTGTCGCGCGCCGCGCTGCGGGACGACGACGACTACGTGTGCGGCAACTGCGCGCGCCGCCCGCACTGA
Protein Sequence
MGKCDEANVEVSMGDSASPMKPDNFTFTPPPEAPVFEPTPEEFLDPLAYISKIRPIAEKSGICKIKPPAHWQPPFAVDVDRLRFTPRIQRLNELEAITRVKLNFLDQIIKFWELQGSVLKIPTVERKPLDLYALHKIVKEAGGFEVCSSERKWSKIARRMGYPQGKGIGSILKNHYEKILYRYDVFKSNGAVGDKETKIEVKGEQTPEKATTTRSRSASKCPPTAATPPPARRYKAEPEPAAEGSHTEGALAGVDDDRKLRTPVKEESPETRRSPRENKWMSAGGSCGARSRVTRATRLREHRMSNMTVSVTPAPAPPPPHAPHPDDPLAKYMCHVCGRGDVEEQMLLCDGCDDSYHTFCLLPPLADVPKGDWRCPVCLAEEVSKPTEAFGFEQATREYTLQQFGEMADQFKSDYFNMPVHMVPTSTVEKEFWRVVSSIDEDVTVEYGADLHSMDHGSGFPTKSSAHLYPGEQQYADSSWNLNNLPVLEGSVLGHINADISGMKIPWLYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPSSKAEQFEAAMKAEAPELFQLQPDLLHQLVTIMNPNLLMKAGVPVYRMDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFTPADWLKMGRECIGHYSTLRRNCVFSHDELVCKMALEADSLSLTVALAAYRDMRTMLHDERKLRKGLLDWGVTEAEREAFELLPDDSRQCTLCKTTCFLSCVSCACAPRVACLRHYRQLCRCAPHHHKLRYRYTLDELPAMLEKLKKKSEQFREWAEAVQNALDPDTPKTCDLDGLRAHLKRAHDLKMHKTELVRALETAVEDAEKCASVIQQLDLNKMRTRTRHHDPKYRLTIHELTLFAAEIDGLACVLPEGSAVKEVLRQTAEFETRATELLNNDLEKTDPAYVRELEEVAELGARLCIVLPQLAPLRARLAQARWLARARARRGAAPALAPAALERLLLDAAELVPHHAVERERSLLYKLKAQVEDWESRARVVLIDTSAPRSPAPDTEPQYTTLAELDALLAEGEDVEAALPSYHALQTAVSHARDWLAKVEEMQSKELYPYMHSVEAVVRRGAQIPLALYEKDQLARALHSAREWKRGAAEMFLKKNWAHSLLEALSPRGEAAEGGAARRRRAGAGAGAGGGAGAGAGSPPPSSLEAGLFLRNFSEDSTPTEIVAAFKHAEQRELHAIKELRARNMRKEVRAPPSAAVTFCVCQKRQYGVMTQCELCKDWFHASCIAAAAEERAASPAPGAGAGAGVGAGAGTGAGTGAGAGAGAEPKFLCPDCTRTKRPRLDRILALLVWLQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGEALQCVTERAMAWQDAARALLASPLLAQLPPHDRAAQAQVRELQNLQVRLAEGDGSLRLVYHVLRLACANREKADKLNAELKKATGRAHDSHSMSQNPRSSASVEHAYSATPRAGAGAGAGAGAGARLAPGLLQKLEDLMLEGDLLEVRLEEQATVWSAVLGARAADGRRGARVLDAGRRKRRTRTPRHHHQLKRTRTRHHHGTVAAKPTLKRGTATTTNYLNRKQGVSSGSGLMMRKHYMARQERRKRGLAQPARGKHPRQPRLGSTRGGGGGAGGAGGAARGSSSSSASSAEDEEDCAAADCLRPTGKEVDWVQCDGGCDQWFHMHCVGLSRAALRDDDDYVCGNCARRPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-