Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991066.1:18300370-18313888[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.3 1.4e+02 4.8 1.7 2 23 604 622 603 622 0.74

2 5 0.00015 0.017 17.1 0.4 1 23 628 650 628 650 0.97

3 5 0.028 3.2 10.0 3.2 2 23 657 678 656 678 0.93

4 5 0.00016 0.018 17.1 2.2 1 23 684 706 684 706 0.98

5 5 0.00026 0.029 16.4 2.0 1 23 712 735 712 735 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.3	1.4e+02	4.8	1.7	2	23	604	622	603	622	0.74
2	5	0.00015	0.017	17.1	0.4	1	23	628	650	628	650	0.97
3	5	0.028	3.2	10.0	3.2	2	23	657	678	656	678	0.93
4	5	0.00016	0.018	17.1	2.2	1	23	684	706	684	706	0.98
5	5	0.00026	0.029	16.4	2.0	1	23	712	735	712	735	0.97

Sequence Information

Coding Sequence: ATGGAGGAAAAGGATTTCGTGTGGACCACTgaatctactaagaaaatgcttGAGCTTCGGTTCCAGAATGACTGGCTTTTTAAAAAGAAGAAACAACCTTGGACAGAATTCCGCGGAATCTTATTAGAAAATGGATATCCAGAAACCATGACACTGAATCATGTACGGAAGAAGTGGTCTTATACTTATGATTGTTACAAAATAGCTAAAAAAACGAGAAATAAGAGTTGGCGGTACTATAAAATTTTTGAGAAGCATTTTGGTAAAGCCTCAATTTTGGACAAATATGAATCATGGGATGATGAATGGCGTTTGAAGCTAGTGATCTGCATCACAGAGGCAAAGGAAATGAAGGTGGACCAGCATTTTTGGAGAACTGTGGAAAAGGCACTGAGGAGTCAGGATCTCCCTGCTGACTGCTGCATCCAAGACATGAAGGGACTTTGGCAGCACATCATCACCACATTCAATAGAAAATACCGCCAAAAACTGAAGAAGGACGTTGATCAGGGCTGGCCTATATTTGACGCCATGCTGTGTTACTACCAGCGCTTCGACCCCGACTACTTGGTGCGGCTCGAGGCAGAGACACCCATAGAGTTCTTCAGTCGGCATCGCAAGTCGTCCAACAAATATATTAAGAACACAGGCTCTCAAGAGAGTGAGACTGAAGAATTTCAGTGGTCGAAGGACATTACAGAAACGTTCATACAAATAAGACTGCAGAATGATTCGCTGTTCAGAGAAAGGAAATGGGCTTGGAATGATCTCCTGAACATAATGAAGCAAGAGTATGGTTTCCCCGGAACTTTGAATGGTCGGGAGATATGTAGAAAATGGGCTGCGACGTTTGGGGAATATCAGAAGGCGAAGGCAACGAACAATAAAAGCTGGATCTATTACACACTTTTCGAGTTGTACCTGGGTGAAGAAAGGCTGAGCCTTAACCCTCTTGTGGGGTGGCAAGAAGAATGGGTTTTAAACCTCATAAGATCGAGAACGGAGTTGGATTATTTGTTCAAATATACCAAATACCGGGACCAGAGTGCTGCATGGAGGGAAGTGGAAAAGAAACTCCGAAGCATGGGGCTACCTATTGACCACAGTTTATTAGATTTAGCAGAAATATGGACGCATCTTTTAAAAACGTTTAAGTGGAAACGCAAGTTCGCCAACAAGGGTATACTGAACGAGCAATGGGCGTATTTCGACGCCATGGCACAGTACGAAATGTTAAAGAGCGCGCCGAAAATTAAGCAACAGGAAGTGGATAGCTACGACCATGTGGGACATGATGACGAGTTCGAGGATGATATCAAGCTGTTGGATTTGAAACAGAGGTTAAAGCCCAAAGTGGAGGTTGCGGAGAAGCAGTGCCGCTCTTGCTGCGGCGAGGATGCGTGCGTGGACCTCTGCAGGACAGATGATGATGGCGTGCAGTTGGCCGCCAAGCTGCGAGCCATTGCGGGCATCGAGATGGAAAAATCCGATAAATTACCGTGGCAAATATGTCTCAACTGCCTAAACGACCTGGAACACGCCTACAAATTCCGACGGAGATGCCAAGACATCGACAGGCACTTCCGCGCGATGAAATCGATCAAAGTCGAACTGTCCACGGACGAGCGTGGCAACGTTAACAACGGCATAGACAAAGATGACATAGGAGACATGGATACGCATTTTGACGCTGATTTTCCGAGTGACACCGACATGAAACAAGAAAAGATACTGGCCAAAACGGAGTCAAAGAAAATTTTAGTgcgaaagaaaaagaaaatacgcAAAATGAGGTACGACTATTGGAAGGTCTGTGAAGTGTGTGGGAAACATACGAGGAACCTGCGCAGTCACTTGGACATGCATTCCACGGGAAAATTCTACTCCTGCGATGTCTGTGAGAAGAAATTTAAGTTCAAAAGCGGTCTTGTCATACACAAGGCCGTCCACGACCCAACGCCGAAAAAGACTTGCGAAGTTTGCGGCAAAACATTCCATATCCTCGCTCAGTATAGGAGACATTACGTTCACCACGCGAACCAACGAAACCACGAGTGTGAGACGTGTGGAAAACGGTTTAATACTTCGGAGATTTTGACTGTTCATAAAAGGACACATACGGATGAAAGGCCATTCAGCTGTTCAGAGTGTTGGAAGACGTTTAGAACTGCAGGTTGTGTCAGTCGACATAAAAGAATTGTACACAGAAAAGCAGTAAAAAATGAATAA
Protein Sequence: MEEKDFVWTTESTKKMLELRFQNDWLFKKKKQPWTEFRGILLENGYPETMTLNHVRKKWSYTYDCYKIAKKTRNKSWRYYKIFEKHFGKASILDKYESWDDEWRLKLVICITEAKEMKVDQHFWRTVEKALRSQDLPADCCIQDMKGLWQHIITTFNRKYRQKLKKDVDQGWPIFDAMLCYYQRFDPDYLVRLEAETPIEFFSRHRKSSNKYIKNTGSQESETEEFQWSKDITETFIQIRLQNDSLFRERKWAWNDLLNIMKQEYGFPGTLNGREICRKWAATFGEYQKAKATNNKSWIYYTLFELYLGEERLSLNPLVGWQEEWVLNLIRSRTELDYLFKYTKYRDQSAAWREVEKKLRSMGLPIDHSLLDLAEIWTHLLKTFKWKRKFANKGILNEQWAYFDAMAQYEMLKSAPKIKQQEVDSYDHVGHDDEFEDDIKLLDLKQRLKPKVEVAEKQCRSCCGEDACVDLCRTDDDGVQLAAKLRAIAGIEMEKSDKLPWQICLNCLNDLEHAYKFRRRCQDIDRHFRAMKSIKVELSTDERGNVNNGIDKDDIGDMDTHFDADFPSDTDMKQEKILAKTESKKILVRKKKKIRKMRYDYWKVCEVCGKHTRNLRSHLDMHSTGKFYSCDVCEKKFKFKSGLVIHKAVHDPTPKKTCEVCGKTFHILAQYRRHYVHHANQRNHECETCGKRFNTSEILTVHKRTHTDERPFSCSECWKTFRTAGCVSRHKRIVHRKAVKNE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00148908;
90% Identity: iTF_00654859;
80% Identity: -