Nudd051247.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:11906661-11910930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.043 5 9.4 1.6 2 23 38 60 38 60 0.89 2 15 0.048 5.5 9.3 1.3 2 23 76 98 76 98 0.88 3 15 0.048 5.5 9.3 1.3 2 23 114 136 114 136 0.88 4 15 0.048 5.5 9.3 1.3 2 23 152 174 152 174 0.88 5 15 0.014 1.6 10.9 2.0 2 23 242 264 242 264 0.88 6 15 0.048 5.5 9.3 1.3 2 23 280 302 280 302 0.88 7 15 0.048 5.5 9.3 1.3 2 23 359 381 359 381 0.88 8 15 1.6 1.9e+02 4.4 1.2 2 23 397 419 397 419 0.87 9 15 0.048 5.5 9.3 1.3 2 23 435 457 435 457 0.88 10 15 0.048 5.5 9.3 1.3 2 23 473 495 473 495 0.88 11 15 0.048 5.5 9.3 1.3 2 23 511 533 511 533 0.88 12 15 0.048 5.5 9.3 1.3 2 23 549 571 549 571 0.88 13 15 0.048 5.5 9.3 1.3 2 23 587 609 587 609 0.88 14 15 0.068 7.8 8.8 0.8 2 20 614 632 614 636 0.84 15 15 0.048 5.5 9.3 1.3 2 23 727 749 727 749 0.88
Sequence Information
- Coding Sequence
- ATGCGAGATCTGCGGAGAGGCTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGGTACATTATCATTAATGTCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAAATGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCTTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTTCATCAGCCGCACTGGACTCAACTGTCACAAGACTCGCGCGCACAACAACgtatcattatcattaatgtCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCTTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTGGCGCGCACAACAAGGTACATCATCATTTATGTCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAAAGACTTTCATCAGCCGCACTGGACTCAACTGTCACAAGACTCGCGCGCACAACAACgtatcattatcattaatgtCTGCCACATTAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGTTGGTTCAATTGTACATTATCATTAATGTCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGGCTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGGTACATTATCATTAATGTTTGCCACATCAAAGCGCGCTTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCAGATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTCCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACATTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTTCATCAGCCGCACTGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCTTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAggtatcattatcattaatgtCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTTCATCAGCCGCACTGGACTCAACTGTCACAAGACTCGCGCGCACAACAACgtatcattatcattaatgtCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGCGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGCGCGCTTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTGGCGCGCACAACAAGGTACATCATCATTTATGTCTGCCACATCAAAGCGCGCGTCATGCTAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGGTACATTATCATTAATATCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGGTACATTATCATTAATATCTGCCACATCAAAGCGCGCGTCATGCGAGATCTGTGGAGAGACTTTCATCAGCCGCACCGGACTCAACTGTCACAAGACTCGCGCGCACAACAAGGTACATTATCATTAA
- Protein Sequence
- MRDLRRGFHQPHRTQLSQDSRAQQGTLSLMSATSKRASCEICGETFISRTGLKCHKTRAHNKVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNKVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNNVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNKPHRTQLSQDSRAQQGIIIINVCHIKARFMRDLWRDFHQPHRTQLSQDWRAQQGTSSFMSATSKRASCEICGKTFISRTGLNCHKTRAHNNVSLSLMSATLKRASCEICGETFISRTGLNCHKTRAHNKLVQLYIIINVCHIKARVMRDLRRGFHQPHRTQLSQDSRAQQGTLSLMFATSKRASCEICGETFISRTGLNCHKTRAHNKVSLSLMSARSKRASCEICGETSISRTGLNCHKTRAHNKVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNKVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNKVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNKVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNNVSLSLMSATSKRASCEICGETFISRTGLNCHKTRAHNKRASCEICGETFISRTGLNCHKTGAHNKVHHHLCLPHQSARHARSVERLSSAAPDSTVTRLARTTRYIIINICHIKARVMRDLWRDFHQPHRTQLSQDSRAQQGTLSLISATSKRASCEICGETFISRTGLNCHKTRAHNKVHYH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -