Nudd048541.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:11424723-11438505[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.44 50 6.2 2.3 1 23 852 875 852 875 0.98 2 10 1 1.2e+02 5.1 0.0 2 23 902 924 901 924 0.95 3 10 0.00066 0.075 15.1 0.4 2 23 946 967 945 967 0.97 4 10 0.13 15 7.9 0.7 1 23 971 993 971 993 0.94 5 10 0.041 4.7 9.5 3.5 1 23 998 1021 998 1021 0.92 6 10 0.42 49 6.3 0.7 2 23 1031 1053 1030 1053 0.93 7 10 0.018 2.1 10.6 0.9 2 23 1060 1082 1059 1082 0.95 8 10 0.0059 0.67 12.1 2.3 1 23 1088 1110 1088 1110 0.94 9 10 8.6e-05 0.0099 17.9 0.7 1 23 1116 1138 1116 1138 0.99 10 10 0.013 1.5 11.1 1.1 1 23 1143 1166 1143 1166 0.98
Sequence Information
- Coding Sequence
- ATGCGCAGTTTAGCGAGTGGACTTGGTTTCGGAGagcaacaaataaaacaaaagaaggaAGATAGCAGCATCAAAATATACTACCAAAATGCACGAGGTCTAAGAACGAAACTGGATGTTTTCCATAACAACATTGAAAGTTCAAGTGCAGATTTGTTTGCAATCACGGAGTCAGGTTGTAATGCGTCGATCCAAGATGCAGAAATTATTCCACCGGGATATCAAATAATGAGATGCGATCGAGCGGACGGCCGAAAACAAGGTGGCGCGTTTCTCGTGGCCTCACACCGGTTTGAGCTGCGGCCGGTACCTATTCCCAGTGACGTCAACGTCGATAACTGCGCGTTCGAACTGGTAGGCGCTGCAGTGTACTTAAACAATAGAGTATTTTGTGAAGTTgatcaaaaaaattatgtacctaATTGTAATGGCCGGCAACTGGATTTGGTGTTGTGTTGTAAGGACATATCGGACGGAGTGTCAGTGGAGGCGGCGGACGAGACACTGGTGCCTGTGGACGCGCACCACCCGCCACTCGCGGTGAGCTTCCGCCGGCCCCCagcccgcgccgcgccggcgtCGCCGGCTCCCGTTACCTCTTGTTCCCTTCAGGAACCGAGGAACGAATGCGAAACGGCGCGGCAGTGGAACTTTGCGAAAGCggattttaatgcaaaacgtcacaaactgTTTAAAGTGAGCGGATTGTGTAACGATTACGTAGCCTTTTCGGAGTGCAGGGCCAAAGTCAAACAAATGATAAATGAGGCGCACGATCAGTATCAAGAGCGTATACAGAGAGAACTGACTAAGGACCCAAAATCTTTCTGGACCTACGTCAGATCCAAGCGAGGGGCGGTGAATCGaaggaaaataacaaaaaacggAAACAGTTTATCGGATTCGGCATGTGCAAAGGAATTCGCCGAGTATTTTCATTCGGTTTACGGGAGCTCGACGGCGGAACTGGACGTGGCGGCGGCGGTTcgcagcggcggcgccggcgccgcgcgcgTGGCGTTGCCGCGGCTGGCACTGCGCGACGTGCGCGCCGCTCTCGCTGCGCTCAAGCCGAAGCGCTCAGCGGGCCCGGACGGTATTCCTGCTTTCATTGTGAAAGATTGTAGCAGTCTCTTGGCGGAACCGCTTCtgcatttatttaacttgtgTTTGGGGACTTCATATTTTCCGGAACGGTGGAAAACTACAAGGGTGATACCGATACCTAAAGGCGATGCCGGGTCGGAGATAAAGGGATTTAGACCGATCGCGATTCTTTCCACGCCAGCGAAGGTATTTGAATCGGCAGTGCAGCGCAGCATCCAGGCGCAGGTGTCGGCCAGACTGTCCGACGCGCAGCACGGGTTCCGACAGGCGCGCAGCACGACGAGCAATCTGCTTAACGCCATGGCATATGTAGTCCCTCATGTAGACGCTGGAGTGCAAGTTGACGTCGCTTACTTTGACTTCAAAAAAGCATTCGATTTGGTGGATAATGACGTCTTGTTGGCAAAGATGGCGGCGGTTGGTTGTACTCCTCAAATGCTACAGTTTTTTAGTAGCTACATGAGGGATCGACAGCAATACGTTGAGTATGCAAATTGCAAGTCTCGGCCGTATTTCACGAGGACCGGGGTAAGCCAAGGAAGTAACTTGGGGCCGTTagaatttttaataatgattaacgaCCTGCCAGAAGTAGTTAAGGATGCCAAATGTCTTTTATTCGCGGACGACCTGAAGTTGCTCCTGGCGATTAAGGATGAGAATGACTGCCAGCGTCTCCAGCGTGATATAGACCGAGTGGTAGAGTGGAGCCAGAAAAATAAGTTACCATTTAATGTAGATAAATGTGTTACAATCACTTTTACCCGGGCCAAGACACCACTTAGTCACAACTATGAGttGTCACACCTAGACGACCAGCCGTCGGCGCGTCTAGTATGCGCGACGTGCGTGGCGCGCCTGCGCGAAGCGGCCGCGTTCAGAGCACAAGTGCTGCGTTGTGAGGCGGCCTTCATACAGCTGAGGATGGGAGAGACTGAGGCCGCAGATCATCAAGCGCGTTTAGACGCCTCAGCCTTACTCGAAGTGGAGATAAAACCAGAGCCGCCCGACGGCAGCGAGCCCGGCGACCCGCCTGACCCCGGCTCCCCGGGCCCCGACCCCGATGACCCCGGCGAGCCTGATGACCCGCGACTCCCCGACCCTACTGATGGTGCAGAACTTAGCGACCCTATTGTTGACGAGCCTATAGAAAAACGGAGCTCCGATTTTAATCGATGCAAATCATTCCTATCAGCGCGAGTGAAGTGCGAGTCGCCTTCAGACTCGGACGACGTGCCGCTGAAGCGACGCAAGCGCCGCGCGCCCGTCGGCCGCTCCGCGCACTCCAAACTACCGCCCAAGCCTGTTGACTCCGGTCTCACGGAAGACCAAGAACGGAGAATGAGCGCAGAAGACGAAGCAGAGTTAAAGAAACACCGCGCCAACGTAAAGATCCTCCTAGAATTCTCCAACGCTACGCCAATTCGGTGTTTTAGTGGTGTTGGGTATAAATGCTGCTATTGCACAGACTTATACCCTGATCCAAACGACTTAAAGACACATACATTGACGAAGCATGACGTTAGAACACGTCGGGTGCTAATGCAAAGAAATCTGCTCTTTGCTTTCCTAGTCAGACTGGATATAACTGGATTGAAATGTCAAATATGCGAGGCAGAAATAGACTCGCTAGAACTCCTAATGGAACATCTCAAAGTTAAGCATGAGAAGAAATTACATATGGAGGTGAAAAGTCATTTACTTCCCTTTAAGTTCGATAATGGCTTAAGGTGTGTTGTATGCGCGAAGGTTTTCACCAAATTTCGTAGTTTACAAGAGCATATGAACGTGCATTTTAGAAACTATATCTGTGATGTTTGCGAGACTGGATATCCTACTAAAAGAATGCTAGTTCAGCATTGTAACATGCATAAAACTGGCGTTTTCAACTGCGAACATTGCCCTAAAAGCTTCAATACTGAACAGAAGAAAAAGCTCCACGAACGCTTCATTCACATATAcggaaaatcaaacttcttgAACAAATGCGGCGTTTGCCAAGAGCGATTCAAAAGCTACCGAGTCAAAGAGCAACACATGCTCCAAGTCCACGGAGTATCCAGCGCTGTCAAATGTCAAGCTTGCGAAAAGAGTTTCAAGAACCAAAGACTTCAAACCATCCACGTTCAGAGAGATCACTTAATGCAGCGTCCTCACAAATGTCCTCTATGTGACATGTCGTTTTTCGAAAAGCAGGAGCTTAAGAATCACTCCGTAAAGCATACGGGATTGAGGGAGTTTCGGTGTGAGGTATGTTTGAAGGCTTATGGGAGGAGGAAGACGCTGAGGGAACATATGAGGATACATGAGGAGAGGAGGTTTAAGTGTGAGATTTGTGCTGTGGGGTTCGTGCAGCGGTGTAGCTGGCGGGGGCATATGAGGTCGAAGCATAGTGAGGTGTGCTAG
- Protein Sequence
- MRSLASGLGFGEQQIKQKKEDSSIKIYYQNARGLRTKLDVFHNNIESSSADLFAITESGCNASIQDAEIIPPGYQIMRCDRADGRKQGGAFLVASHRFELRPVPIPSDVNVDNCAFELVGAAVYLNNRVFCEVDQKNYVPNCNGRQLDLVLCCKDISDGVSVEAADETLVPVDAHHPPLAVSFRRPPARAAPASPAPVTSCSLQEPRNECETARQWNFAKADFNAKRHKLFKVSGLCNDYVAFSECRAKVKQMINEAHDQYQERIQRELTKDPKSFWTYVRSKRGAVNRRKITKNGNSLSDSACAKEFAEYFHSVYGSSTAELDVAAAVRSGGAGAARVALPRLALRDVRAALAALKPKRSAGPDGIPAFIVKDCSSLLAEPLLHLFNLCLGTSYFPERWKTTRVIPIPKGDAGSEIKGFRPIAILSTPAKVFESAVQRSIQAQVSARLSDAQHGFRQARSTTSNLLNAMAYVVPHVDAGVQVDVAYFDFKKAFDLVDNDVLLAKMAAVGCTPQMLQFFSSYMRDRQQYVEYANCKSRPYFTRTGVSQGSNLGPLEFLIMINDLPEVVKDAKCLLFADDLKLLLAIKDENDCQRLQRDIDRVVEWSQKNKLPFNVDKCVTITFTRAKTPLSHNYELSHLDDQPSARLVCATCVARLREAAAFRAQVLRCEAAFIQLRMGETEAADHQARLDASALLEVEIKPEPPDGSEPGDPPDPGSPGPDPDDPGEPDDPRLPDPTDGAELSDPIVDEPIEKRSSDFNRCKSFLSARVKCESPSDSDDVPLKRRKRRAPVGRSAHSKLPPKPVDSGLTEDQERRMSAEDEAELKKHRANVKILLEFSNATPIRCFSGVGYKCCYCTDLYPDPNDLKTHTLTKHDVRTRRVLMQRNLLFAFLVRLDITGLKCQICEAEIDSLELLMEHLKVKHEKKLHMEVKSHLLPFKFDNGLRCVVCAKVFTKFRSLQEHMNVHFRNYICDVCETGYPTKRMLVQHCNMHKTGVFNCEHCPKSFNTEQKKKLHERFIHIYGKSNFLNKCGVCQERFKSYRVKEQHMLQVHGVSSAVKCQACEKSFKNQRLQTIHVQRDHLMQRPHKCPLCDMSFFEKQELKNHSVKHTGLREFRCEVCLKAYGRRKTLREHMRIHEERRFKCEICAVGFVQRCSWRGHMRSKHSEVC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -