Nudd051497.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:14423038-14443957[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 12 8.2 0.9 5 23 5 24 4 24 0.95 2 11 1.1 1.3e+02 5.0 0.9 1 23 63 86 63 86 0.94 3 11 7.1e-05 0.0081 18.2 1.6 2 23 276 298 275 298 0.96 4 11 3.3 3.8e+02 3.5 0.1 2 13 322 333 321 335 0.82 5 11 3.3 3.8e+02 3.5 0.1 2 13 389 400 388 402 0.82 6 11 3.3 3.8e+02 3.5 0.1 2 13 456 467 455 469 0.82 7 11 5.2 6e+02 2.8 0.2 11 23 560 572 558 572 0.90 8 11 5.9e-06 0.00068 21.6 0.4 1 23 578 600 578 600 0.98 9 11 3.5e-06 0.0004 22.3 0.4 1 23 606 628 606 628 0.93 10 11 1.7e-05 0.002 20.1 0.4 1 23 634 656 634 656 0.99 11 11 2.8e-05 0.0032 19.5 0.2 1 23 662 685 662 685 0.97
Sequence Information
- Coding Sequence
- atgtcaTTTGCGCAGTGCCACAAGATCTTTGCGAGTGAGAAATACTTCAACATTCACTACAACAAGACCCACGGCGGCCTGCCTGCCGTCATCGAGGGGATAGAAAACGAGCAGGAAGCAAGCGAGCCGACACAGGAATCGGTGGTAGAGGAAGTTAAACCGAAGGCGCCGGAGCAAGTCATCTATTACAAGTGCGACCTGTGCAAAATACTATACCCGAGCGAGAAAGCTTACAACCTGCATTTTGAGAAGAAACACGGCGGGCAAAGTTGCCAAGATATACAGACCGGCTTCCAGCTTATAGAGCAAGAGTTGACGGAGGAATTGCGGTTCTCGCCGCCGCCCCTTGAAGTGTTCACCTGCGAATTCCTGCTGTCTACAAGTGACAAAGCGTTACAAGTTGCCAAGGTATTCAGACCAGCCTTCCAGCTCATAAAGCAAGAGTTGACGGAGGAATTGCGCTTCTCGCCGACGCCCCTTGAAGTGTTCACCTGCGAATTCCTCCATTTGTACAATAAACACGGCGGGCTAAGTTGGCAAGAAATGCTGACCGGTTTCCAGCTCATAGAGCAAGAATTTACAGAGGAATTGCGCTTCTCGCCGCCGCCCCTTGAGGTGTTCACCTGCGAATTCGGCAAAGTTGTCAAGATAAActatgcgagtttaagcaacAGCTGTTGTCTACAAGTGACAAAGTGTTACAAACTCTATTTGTACAAGAAACAAGGCGGGCTAAGTTGGCAAGAAAAGCTGACCGGTTTCCAGCTTATAGAGCAAGAATTGACGGAGGACTTAAGCTACTCGCCGCCGCCTATCGAGGTGTTAACCTGCGAATTCTGCCCGAAGACGTTCACGATGAAGCGCTCGCTGCAAATTCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCCGGCGAGCGCGAGCGCTCCAGTGCGCGCGCACACAACGCCAGCCGCAGCAAGGTGTGCGACGTGTGCGGCCGCGCTTACAACGTGAGTACAAACCCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGTGCGACGTGTGCGGCCGCGCTTACAACTACAAACCCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGTGCGACGTGTGCGGCCGCGCTTACAACGTGAGTACAAACCCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGTGCGACGTGTGCGGCCGCGCTTACAACTACAAACCCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGTGCGACGTGTGCGGCCGCGCTTACAACGTGAGTACAAACCCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGTGCGACGTGTGCGGCCGCGCTTACAACTACATACCCACCGCAAGCGCGTGCACCTGGAGCAACTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGTGCGACGTGTGCGGCAGCGCTTACAACGTGAGTACAAACCCACCGCAAGCGCGTGCACCTGGAGCAGCTGCAGGCGGCCGGCAACGCCAGCTGCAGCAAGGTGGCAGTAAGTCGAATGCGGCGCTGCGCTACCACCAGCGGAGACACACTGGAGAGAAACCGTATGCCTGCTCCGTCTGCCCCAAGCGTTTCACCATGCCTATGTTCCTGCAGATCCACATGCGAACACACACTGGAGAGAAACCATTTGAGTGCCCGCACTGTCCCAAGGCGTTCACTAATAAGGCTGCGCTTATCCGACATGACCGGATCCACACGGGGGAGCGGCCGTTCAAGTGCGACACGTGCGCGAAGGGGTTCATCAGCAAGGCGATGCTCAACAGACACGTTCGGGTACACACTGGCGTTAAGCCTTACGCCTGCCCGGAATGCGGCAAATTATTCACGCAGTCCAACTCTATGAAGCTGCACGTGAACACGGTGCACCTCAAGCTCCCGGCGCCCTACAAGAGCTTGAGCAGGAGGAACAAGAGCGAGGCGAGGGCTCTGCAGCTCGCGCGCAAGAATACGCCCATGGAGGAGCTCGTGCTGGGGCAATAG
- Protein Sequence
- MSFAQCHKIFASEKYFNIHYNKTHGGLPAVIEGIENEQEASEPTQESVVEEVKPKAPEQVIYYKCDLCKILYPSEKAYNLHFEKKHGGQSCQDIQTGFQLIEQELTEELRFSPPPLEVFTCEFLLSTSDKALQVAKVFRPAFQLIKQELTEELRFSPTPLEVFTCEFLHLYNKHGGLSWQEMLTGFQLIEQEFTEELRFSPPPLEVFTCEFGKVVKINYASLSNSCCLQVTKCYKLYLYKKQGGLSWQEKLTGFQLIEQELTEDLSYSPPPIEVLTCEFCPKTFTMKRSLQIHRKRVHLEQLQAGERERSSARAHNASRSKVCDVCGRAYNVSTNPPQARAPGAAAGGRQRQLQQGVRRVRPRLQLQTHRKRVHLEQLQAAGNASCSKVCDVCGRAYNVSTNPPQARAPGAAAGGRQRQLQQGVRRVRPRLQLQTHRKRVHLEQLQAAGNASCSKVCDVCGRAYNVSTNPPQARAPGAAAGGRQRQLQQGVRRVRPRLQLHTHRKRVHLEQLQAAGNASCSKVCDVCGSAYNVSTNPPQARAPGAAAGGRQRQLQQGGSKSNAALRYHQRRHTGEKPYACSVCPKRFTMPMFLQIHMRTHTGEKPFECPHCPKAFTNKAALIRHDRIHTGERPFKCDTCAKGFISKAMLNRHVRVHTGVKPYACPECGKLFTQSNSMKLHVNTVHLKLPAPYKSLSRRNKSEARALQLARKNTPMEELVLGQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -