Nudd037236.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991068.1:2549867-2557994[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.029 3.4 9.9 0.2 1 23 306 329 306 329 0.89 2 11 1 1.1e+02 5.1 5.0 1 22 345 366 345 367 0.87 3 11 0.00013 0.015 17.3 2.4 2 23 373 394 372 394 0.96 4 11 0.002 0.23 13.6 0.3 3 23 400 421 398 421 0.95 5 11 0.013 1.5 11.0 1.9 1 23 424 446 424 446 0.96 6 11 0.00094 0.11 14.6 0.1 2 23 520 541 519 541 0.95 7 11 0.79 91 5.4 0.2 2 23 561 583 560 583 0.95 8 11 1.4e-06 0.00017 23.5 4.1 1 23 589 611 589 611 0.98 9 11 0.00078 0.089 14.9 0.7 2 23 617 638 616 638 0.96 10 11 0.0049 0.56 12.4 3.3 2 21 645 664 644 667 0.94 11 11 3.3 3.8e+02 3.5 3.4 3 19 706 722 705 727 0.88
Sequence Information
- Coding Sequence
- ATGGACCAAGGTACCGCCCTAACGCATTCGGAAGGCTACCCTGTTCTGTGGCTACCAAAAAAGTGCACCACATTAGAAACCAATTGTGAAGTATCCGATAATGTATTTATTGAGCTGAATATCTCTTCCCCTGACAGTGAAGGGAATGAAATGTGTATTTACTCAGGGTTTTGTAATGTAAGGTTGATAGACAGCTATGATATAAATGTGTCCCACAATGGAAAGGATAATGGTCCTAGTGAGTATAATGATAATGACCTTATTTCTGTGCTAGTTGATGAATCAGGGAACCAGATAGCAGACGCCTTCAACCAGAGTCAAGTCTGGATAGATCCGACAAGAAGCCCATTTGTGTATAACCACTATGATACGGACCAGCAAGGACATTACTCTATCTACCATAATGCTAATACTAATCACATAACAGTAGAACAGCATAACACATACATCACCCAAAATGTGTATAACTACAACAAGGAGCCCACATACCCACCTACAGATGAATTTGAGCATAAGAAGTTCCGGAAAGTTCCAGTTAGCGAATCCAGTGCTCAGCAAAACGCAGCAGATCCAAACTTCAACTTATATGGAGAAGACGAGTTTGAATGTGGTGTGTTTCTGTCTCAGTTGCCTGAAGAGATTTTAAATGAAAAGGAGAACAGGGTTAGAGAGGAAAGGAAATACATTGGTTTACCAAGTGAGAATGGGGCATTGAAGCAGTTGATGTCGTCGGACATCCAGTCATCTACAAAGCAGAGGAAGACTATACTGTTCCTTGGCAGTGACTCTCACTATGGACAGACAATACAGAAGATAGCTATGAATGATCCATTCTTGGTATGTTCACCGAAAGTGGAAGTGAACTCACAGGTTGTGTATGAAGAGCCTAACTACAGGAACGTCAGTCAGAAGAAGTACCTGTGTGCCAAGTGCAAGCAGGTCTTCAACCAGATCATCGAGTTCCGACAGCATATGGTCGGGGACCACACCAGCCCCAGGACCTATGATGGCAGAACAGTCGGCGAGATCCAATTCCTCTGCACAGAATGCGGAAAACACATCAAATCCCAAAAGAAATTCGAGCAACACTGCATTAGCCATGGCGACCCAGAACTAGAATGCAGCAAGTGCCACAAAGTGTTCGCATCAAAATTCACCTTACGTGCACACAATAAGATCCATTCTCGCCAATTCGGCTGCGTTTATTGCTCAAAAACTTACTCCAAAAACGACGGTTTAAGGACTCATGTCGCTAAAGTACATTGTATCTTCATGTGTGAGCATTGCGACTTTCAAACGAATCAAAGGAACGATTTGAAAGTCCATGAGAATGAACATAAAATCATTCCGAATGAATCGGATTTTGAAACTTTGAGTGCTATGGACGACTCTTGTGAATCAGATATGATAAAGCTGCAGCCTATGGAGGCTCTAGAAGACGTGAAGAGTGTCAAGGATGAGGACATTAGGAGGGCGGACTCGGTGATAGCGAAAGTGGTGTCTAATGAGATATTTGGGTGTAAAGGGAAGAGGAGGCAGTACAGGAAGTGTAATAAGGTGTGCGACGTCTGCCTAAAGGTCTTCGACCGCATCGGAGATCTGAAACGTCATCTCATCGAGCACATCATAAAGAGCACCCTCGACAAGATCCCAGTCACCCGCAATGGCACCCTCAACATCCAGTGCGAAGTCTGCCAAGACGAAATGTTCACTAAGGTAGATAGATATAAGGCCCATCTTCGCGAGCATGCCAAACTAACCATCTACAAATGCACCTTCTGCGATAAATCGTTCAGTGACTCTAGCAACTTTTCTAAACATAAGAAAATACACGGAACAACGTATTTACAATGCGATTTGTGCGCCAGGAAATTCAACTCTAAACGTATGCTAATACAGCACATGGAATACCATAGGAAGAACAAGCCTATACCTTGCCAGTATTGCAATAAGATGTTCCATTTTGAGTCCATGTTAAATAAACATATCAAATGCGCTCATGCAAACACTTTCAGTAAGTTCAAATGTAGGTTTTGTTGCAAATATTTTAAGACTTTAAAGGAAAAATGGGATCATGAATGGTCTATCCACAATGTTAGGAAGGTGATAGTCGATTGTCTGCTCTGTAACTCCAAGTTTAGAAAGTATACTGAGTTAAAAAAACATTGCTCTATGGTGCATAATGTTGACATACCGACCGCTAAAAAGCTGTGGCCGAAAGAGGCTGGTCCTATTAAAAAAGCTGATTAA
- Protein Sequence
- MDQGTALTHSEGYPVLWLPKKCTTLETNCEVSDNVFIELNISSPDSEGNEMCIYSGFCNVRLIDSYDINVSHNGKDNGPSEYNDNDLISVLVDESGNQIADAFNQSQVWIDPTRSPFVYNHYDTDQQGHYSIYHNANTNHITVEQHNTYITQNVYNYNKEPTYPPTDEFEHKKFRKVPVSESSAQQNAADPNFNLYGEDEFECGVFLSQLPEEILNEKENRVREERKYIGLPSENGALKQLMSSDIQSSTKQRKTILFLGSDSHYGQTIQKIAMNDPFLVCSPKVEVNSQVVYEEPNYRNVSQKKYLCAKCKQVFNQIIEFRQHMVGDHTSPRTYDGRTVGEIQFLCTECGKHIKSQKKFEQHCISHGDPELECSKCHKVFASKFTLRAHNKIHSRQFGCVYCSKTYSKNDGLRTHVAKVHCIFMCEHCDFQTNQRNDLKVHENEHKIIPNESDFETLSAMDDSCESDMIKLQPMEALEDVKSVKDEDIRRADSVIAKVVSNEIFGCKGKRRQYRKCNKVCDVCLKVFDRIGDLKRHLIEHIIKSTLDKIPVTRNGTLNIQCEVCQDEMFTKVDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTYLQCDLCARKFNSKRMLIQHMEYHRKNKPIPCQYCNKMFHFESMLNKHIKCAHANTFSKFKCRFCCKYFKTLKEKWDHEWSIHNVRKVIVDCLLCNSKFRKYTELKKHCSMVHNVDIPTAKKLWPKEAGPIKKAD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654719;
- 90% Identity
- -
- 80% Identity
- -