Nudd051175.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- Znf784
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:10950700-10976667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00095 0.11 14.6 1.9 1 23 292 314 292 314 0.99 2 11 0.41 47 6.3 1.3 2 23 322 344 322 344 0.95 3 11 0.0067 0.77 11.9 4.1 1 23 389 412 389 412 0.98 4 11 0.0011 0.12 14.4 0.7 2 23 421 443 421 443 0.94 5 11 0.11 12 8.2 0.3 2 20 452 470 451 472 0.92 6 11 0.011 1.3 11.3 1.3 3 23 485 506 484 506 0.95 7 11 7.1e-06 0.00082 21.3 0.6 1 23 511 534 511 534 0.96 8 11 0.019 2.2 10.5 3.4 2 23 561 582 560 582 0.97 9 11 0.00016 0.019 17.0 0.3 1 23 588 610 588 610 0.96 10 11 0.00063 0.072 15.2 0.6 2 23 617 638 616 638 0.97 11 11 5.7e-05 0.0065 18.5 2.4 1 23 644 667 644 667 0.96
Sequence Information
- Coding Sequence
- ATGTGTTCGACGCAGTTGACTGAGGATACCGTGAAGGTGGAGCTATTACCAGAAAATTTGCAAGCTTGCAGGATATGTCTGGTGTGGGATGTGAAACTTTATGATATTCAGGAATGGGGTCTTGGCGATATGTATGcggaggtcacgggaacgacgTGGTCGGCGTGGGATGGGCTCCCGCAGCACGTGTGCGCGTGTTGCCGCGCGCAGCTGCGCCGGGCGCTCGCGCTGCgcacgcgcgcgcgccgcgccgacTCGCTACTCAAGCAGGCGCTCAAGCATCAGCACTTTATTACAAACACTTTTATCCGCACAATAGACCGATCAACGTACAAACTCACGCACACACTCTCTATTAAGACTTGTAAAATCAACGCTTCTTACTGTCACGATGATACACACACTAAAAACCTTCACAACAATATATGTGTCATAGACAACAATAAAGTTAATGACATTGTAGACAATGATCTGAAAGAATTCAATCTAACTTGTGATAATACTATTAAAAATGATTCTCCAAATCCCATCTCGGACATTGATGATTTTGAAGTGGAAGATGATCCTGACAAGTTAAACAGTAATATAGATGCAAAAACTAATttagttgaagtaaaaatagCAGAAACCACAGATTCAAAGATTAGAAAAGTTAGAAATATAAAAAGAAGAAGGCGGAATAGACAGAGAAACGAAGAGAAAAGTAAAACGGGGAGAAGAAGGAAAGACCGCACAAAACAAAAGTTCTCTACTGAAGAAGATTTCAAAGAGTTTGAGAAGAAATACGATTTCCAAGTGCAGTGTTTGACAGAAGAAGAAATGGAGAAAGAGATGGAGAAGAGAAAAGAGTCTGATAAATATCTGAAGGGTGAATACAAGTGTGACTTGTGTTATAAGGGATTTTTGACGTTATCTACTTATGAGAATCATATGAAGACCCATGATCCTGCGCGCGGTGACAACGAGTGCCGGCTGTGCCACCTGCGCTACCAGTTCCCGGTGAAGCTGCGGCAGCACGTGCAGAGCGCGCACCGGCTCAAGTTCCGGTGCGCGAGGTGCAGCGAGCTCGTGCGCGGCAATTCCTGTGTGTTTACTGTATCCTGCGTCTTGTGTCGTGGCAGGGCCTGCGCAGTGCTTCACGCGGCGTACCACGAGGGCACGACGTTCCAGTGCGCACACTGCGACAAACGATTCCTCAAAAAAACTTCGCGTACGTCGCACATGCGCATGGCGCACCCGGTGGAGAACGCGGCCGGCGGTACCTGCGAGGCGTGCGGCGAGACATTCACCAGCCGCACGGGGCTCAAGGCACACAAGACACGCAGCCACAAGAAGGCCATACTGCCTGAACTAAGATGCCGAAAATGCAGAATACAGTTTGACAATATGGAGGCTTTGAAGAGGCATAAGGAAATGCAGCTGGACAACAAATGTGACCCCAGCCTGAGCGCGTGTGAGCAGTGCGGAGAGAGCTGCGCAAGCGCCGATGACCTAATATTGCACAAGCACAAGAGACACGCAGTAGAACTCTTCACTTGCGACACCTGCACAAAATCGTTCACATCGAAGGCGTCCCTGGCGACACACATAGACCGGATACACAGACGGATCCGGCCGCCGAAGGCTGATTATAGCGATGGCGGGCGGCGGAAACAGCCGGACTGGTTGCACTGGGCGTCTGTGTGCGAACACTGCGGGAAGCGGCTTTCTTGTCTCGCGACGTTGAAGATACACATGAACAAGCATACGGGAGAGAGACCGTACAAATGCTCGCTCTGCCCCAAGGCGTACATGACGCCGTACGGACTGAATAACCACCAAGCGTTCCACACGGGGGTCAGGAAATGGCAGTGCCCCGAGTGTCCCGCCACATTTATGCACCAGTCTTCCGTCTACCAGCACAGGAAGATACACACAGGCGAGCGCTCCCACCAATGCACGATATGCGACAAGTATTTCACTCAATCTGGATCACTATACACACACGTCAAATACGTGCATATGAAGGAAACTCCCCCGCCACGCAAGCGCAGCAAAAAACCCGCAGCAATGTAG
- Protein Sequence
- MCSTQLTEDTVKVELLPENLQACRICLVWDVKLYDIQEWGLGDMYAEVTGTTWSAWDGLPQHVCACCRAQLRRALALRTRARRADSLLKQALKHQHFITNTFIRTIDRSTYKLTHTLSIKTCKINASYCHDDTHTKNLHNNICVIDNNKVNDIVDNDLKEFNLTCDNTIKNDSPNPISDIDDFEVEDDPDKLNSNIDAKTNLVEVKIAETTDSKIRKVRNIKRRRRNRQRNEEKSKTGRRRKDRTKQKFSTEEDFKEFEKKYDFQVQCLTEEEMEKEMEKRKESDKYLKGEYKCDLCYKGFLTLSTYENHMKTHDPARGDNECRLCHLRYQFPVKLRQHVQSAHRLKFRCARCSELVRGNSCVFTVSCVLCRGRACAVLHAAYHEGTTFQCAHCDKRFLKKTSRTSHMRMAHPVENAAGGTCEACGETFTSRTGLKAHKTRSHKKAILPELRCRKCRIQFDNMEALKRHKEMQLDNKCDPSLSACEQCGESCASADDLILHKHKRHAVELFTCDTCTKSFTSKASLATHIDRIHRRIRPPKADYSDGGRRKQPDWLHWASVCEHCGKRLSCLATLKIHMNKHTGERPYKCSLCPKAYMTPYGLNNHQAFHTGVRKWQCPECPATFMHQSSVYQHRKIHTGERSHQCTICDKYFTQSGSLYTHVKYVHMKETPPPRKRSKKPAAM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654661;
- 90% Identity
- -
- 80% Identity
- -