Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991076.1:5895323-5896333[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.011 1.3 11.3 3.6 1 23 10 32 10 32 0.99

2 10 4.3e-05 0.0049 18.8 0.4 2 23 59 81 58 81 0.94

3 10 0.013 1.4 11.1 0.3 2 23 104 126 103 126 0.95

4 10 0.0018 0.2 13.8 0.2 2 23 132 154 131 154 0.95

5 10 2 2.3e+02 4.1 8.0 1 23 161 184 161 184 0.90

6 10 0.44 50 6.2 0.1 2 23 190 212 189 212 0.85

7 10 4.6e-05 0.0053 18.7 2.7 1 23 219 242 219 242 0.97

8 10 0.17 20 7.5 0.1 2 23 249 270 248 270 0.95

9 10 3.5e-07 4e-05 25.4 1.6 1 23 276 298 276 298 0.99

10 10 1.3e-06 0.00015 23.6 1.3 2 23 305 326 304 327 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.011	1.3	11.3	3.6	1	23	10	32	10	32	0.99
2	10	4.3e-05	0.0049	18.8	0.4	2	23	59	81	58	81	0.94
3	10	0.013	1.4	11.1	0.3	2	23	104	126	103	126	0.95
4	10	0.0018	0.2	13.8	0.2	2	23	132	154	131	154	0.95
5	10	2	2.3e+02	4.1	8.0	1	23	161	184	161	184	0.90
6	10	0.44	50	6.2	0.1	2	23	190	212	189	212	0.85
7	10	4.6e-05	0.0053	18.7	2.7	1	23	219	242	219	242	0.97
8	10	0.17	20	7.5	0.1	2	23	249	270	248	270	0.95
9	10	3.5e-07	4e-05	25.4	1.6	1	23	276	298	276	298	0.99
10	10	1.3e-06	0.00015	23.6	1.3	2	23	305	326	304	327	0.94

Sequence Information

Coding Sequence: ATGCCCTTTAGGCGGGCCGGGAACATATACAAATGTTTCTTCTGCTTCAACAATTACAATAAGGCCAGCGATCTGAAAGATCACACAAAAACACATGTCGATGATGACCAGAAGGTCAGAACAATTAAACGATGCGGAATACAAACTATTGTGAACTTAGATATCACTGAGCTGAGATGCAAGCAATGTGGTAAAGAATTTAATGATATAACGAATTTATTGACACATCTCCAAGAAGACCATAAGGAGATATGCGTTCTGGAAGGTCTACAATATATAAGTTGTTACAAAATATCCGACGGTGACATGAAATGTTTGATTTGTGATCAGAGCTTCGAGTATTTCTATCCTCTCATGCTCCACACATTAAGATTACATAAAGTAAGACGGTTAAAATGCGAGATATGCGGCCTGAGCTTCGGCGCTAAAGACAGCATGGTAAAACACTTCAAGAGTGTTCACGAAACCAATGCAGAAACATTCAAATGCAGGCATTGCGAGAAAGTATTCTCCGCGCATCATAAACGATACGATCACGAAAAGAGGATGCACAACGAGAAAGCCAAAAAATGTCCTATCTGTGGAGAAATCCTGGGCAGCACATTCAAAAAGGCATCTCACATGGCGTCCGCACACAACCAAATGGCAACAGAATTCAAATGCGAGAACTGTCCGAAAGTTTTCCGGCTCCAAAACCATTTAGTGAAGCACAACAAGCGAGTACACTTGAAAGAGAAGACCAAAGTGTGCGCTGTCTGCGGCGATAAGTTTTTCGAAAATCGTCTGCTCGCTTTGCACATGGTTAGACACAGTGACGAAAAACCGTACGAGTGTGAAATTTGTCATAAGAAGTTCTCGCGGAAAAAGGGGCTGGAAATTCATGTGAGGATACATACGGGAGACAAGAGGTGTGTGTGCAACGAGTGTGGGGAAGCGTTTGTGCAGTGGACGAGTTTAAAGCTGCACTTGAGGGTGCATCACGGGCTTGAGAAAAATCCGCAAACCAATTGA
Protein Sequence: MPFRRAGNIYKCFFCFNNYNKASDLKDHTKTHVDDDQKVRTIKRCGIQTIVNLDITELRCKQCGKEFNDITNLLTHLQEDHKEICVLEGLQYISCYKISDGDMKCLICDQSFEYFYPLMLHTLRLHKVRRLKCEICGLSFGAKDSMVKHFKSVHETNAETFKCRHCEKVFSAHHKRYDHEKRMHNEKAKKCPICGEILGSTFKKASHMASAHNQMATEFKCENCPKVFRLQNHLVKHNKRVHLKEKTKVCAVCGDKFFENRLLALHMVRHSDEKPYECEICHKKFSRKKGLEIHVRIHTGDKRCVCNECGEAFVQWTSLKLHLRVHHGLEKNPQTN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00657620;
90% Identity: iTF_00654631;
80% Identity: -