Nudd045606.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991074.1:1122743-1135933[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0032 0.37 13.0 0.1 2 23 208 229 207 229 0.96 2 12 3.7e-05 0.0043 19.0 2.3 1 23 235 258 235 258 0.97 3 12 0.67 77 5.6 3.1 1 23 271 293 271 293 0.97 4 12 1.2e-05 0.0014 20.6 3.2 1 23 555 577 555 577 0.98 5 12 0.00045 0.052 15.6 2.0 3 23 584 605 583 605 0.97 6 12 0.58 67 5.8 0.6 1 23 613 635 613 635 0.79 7 12 0.00036 0.041 15.9 4.2 3 23 640 660 639 660 0.98 8 12 0.064 7.4 8.9 0.4 3 23 674 695 672 695 0.95 9 12 0.00031 0.035 16.2 1.9 3 23 703 723 701 723 0.98 10 12 0.00016 0.018 17.0 2.1 2 23 730 751 730 751 0.98 11 12 0.00074 0.084 15.0 1.8 1 23 757 780 757 780 0.97 12 12 0.0018 0.2 13.8 1.2 2 23 785 807 784 807 0.94
Sequence Information
- Coding Sequence
- atggatttGGACGAGCCAAATAAACTGTTAAATTCCAACTTTCTTGATGAAAACGATCTGAATTATACTCCAAAAATGTCTAAGGTCAATAACGAAGGTGTTATTTCGAATTATAAAATGGAATTGACTACGAAACGGGCTGTGGAACTTTTTCTTGAAGGGACGCTGCGTAGCAAAGTTTGTCGATATTGTTTGTGTGTGGCATCTCCGCTCTCTGATCTGGACCAAATAATGCAAATTGCAGGCATCGGGACATTTTACAAAGTGTCTATTCGGGATATGGTCGCCTGTTTCCATCCTTTTAAGGTACAGAATGATCCCAATTTCCCGAGAaaaatatgcaataaatgtCTCAACCGTACCATCAGTGCTTACCTCTTCACACAGCAATGTGAACAATCGGAACGAGCCTTGCGAAACTGCTTTGAAGACATGTATGCAAAACTTGAAAAACTAGATCCACTAGATAAAACCAAAAAGCGAGGCAGACAGaaaaggaaccctaattacaATGTCCTGTACACAGACCATGCAAAAGTTATGGACTATGCTGAACCAATCCGGAACATTGTTAACATAAAGTCTGTATCGCTCAGTGACGAGAAATACATGTCCGATTTGGAGTGCCCGAAATGCTGGCAAATATTCACTAAAATTGAGGACTTGATTGTTCATGAGAAAAGTCATCCAAGCAGCATGTGGTTTAATTGCCGTCTGTGTGGCAAATCGTTTGTCAAACGCTTGCAATTGAAGCGCCATTTAAAAAAGGAACATAGTGGTCCAGAAATAGCAATAGAGGAAAATCACTTGTTCCAATGCGGCACTTGTGGCTTCAGTTGTGATGATCACAGCATATATTTGCAGCATATTGAGAAGCATAAATTCCAATCCGTGTTAGAACATTTGGTAGAAAAGAAAATGGATAAATTGTGCACTGTGTGTCTTGATAAGAATCCAAAGTTGACGGATTTGGAAAAAATGGTGCGGCTTTACGGTGGATATCCAGGTGTTACGGGGGACAAAAGCTTGTACAGCATTTTAAACTCCACATTGCCTGATaTGAATTCCTCCGCTAGCTACATTGGAACAAAAATATGCGAAAAGTGCCTTAACAATGCAATAACATCGTATGTGTTCATAAACCATTCCATTTATACCCGGGACAGACTAAATAACTGCATTACATCCATGATAGACAGCCTAGAGAAAGTAAATGAACCGGAAGGaaatatatttatagaaatagcAAAGGAatctattttaccaataaaaCAGCAAGATTATTTCGATGAAAATCTACTTCTTGAGGAAGATGAGGTGGATGAAACTAAATTAAAAGTGGATGTGCTTGAAGACGAATTTAGGAAACCAGATAGTGATGAAAGTGAATCAGAAACTGAAATAAAAGACTACATAAATGCTTTTCTCAAAGAAGATAGTCAAGACATAGATATATTCAATGATTTCAGCGTTAAAAGAGACCCAGAAATAGATAACCCAGCTAAAAGAGTGACGAAAACCTATACTAACAAAAGACTTGTCAATGGATATCAAATTAAATATCAGTCAGATAACGATGAATACAATTCTTTAGACGATGTCAGTGAATTCCTCAcgtttaaaaagaaaaacaaacctaGCAAACGGTATTATAAGTACAAATTCACCTGTCCGATGTGTAGCAAAAGCTTTATCACCGATTTCCATCTCAAAAGGCATATCTTAAAACATGTTCACAAGAAAGTTGATTGTTACATCTGTGGCAAACACTTTAAATCTAAATTCTTCCTATATGAGCATATTAAAATGGTTCACATTTTAGACAAAACGAAATACTTCTCTTGTGAAACTTGTGGTAGAACATATCAGGATGAAAACAGATCGAGGGCGCACGAAAATTCACATTTGTCGAAAGACTGTCACTTGTGTGGAAAGATCTTTGTCAGTCAAAGACATTTCGACAGTCACATGCAGAGGCACGCCGTCAAGTTTAATCTGGTGAAAACGAGCAGTCAAATTTGCAGTTTCTGTGAGAAGGACTACTCAAACGACAATCAACTTTCCCTGCATGTCAATAAGGTGCATTTGCAAATAAAACCCTATGGCTGCGACATGTGCGAACGGCAGTTCTATACTgagactaatttgaaaaaacataaaaagacTCACAACATGAAAGCTAAAGAAACATGTGAATTGTGTAATAAGACATTTAATACACGGAAAAGTATGGTGATTCATCTCAGAAAACATACGGGGGAGACGCCCCATCGTTGCCCACTTTGCGGAAAAGCATTTTATTCAGAATTAAAAGCTAAAAACCATATGAGGAACTACCACGGGGGGACGTTATACTGCAAGTTGTGTAAGAGTGTGTTCTCAAAGAAATATGATCTTAAATCTCATGTTATTATGTTTCATAATCAAAACGCTTTGTTATAG
- Protein Sequence
- MDLDEPNKLLNSNFLDENDLNYTPKMSKVNNEGVISNYKMELTTKRAVELFLEGTLRSKVCRYCLCVASPLSDLDQIMQIAGIGTFYKVSIRDMVACFHPFKVQNDPNFPRKICNKCLNRTISAYLFTQQCEQSERALRNCFEDMYAKLEKLDPLDKTKKRGRQKRNPNYNVLYTDHAKVMDYAEPIRNIVNIKSVSLSDEKYMSDLECPKCWQIFTKIEDLIVHEKSHPSSMWFNCRLCGKSFVKRLQLKRHLKKEHSGPEIAIEENHLFQCGTCGFSCDDHSIYLQHIEKHKFQSVLEHLVEKKMDKLCTVCLDKNPKLTDLEKMVRLYGGYPGVTGDKSLYSILNSTLPDMNSSASYIGTKICEKCLNNAITSYVFINHSIYTRDRLNNCITSMIDSLEKVNEPEGNIFIEIAKESILPIKQQDYFDENLLLEEDEVDETKLKVDVLEDEFRKPDSDESESETEIKDYINAFLKEDSQDIDIFNDFSVKRDPEIDNPAKRVTKTYTNKRLVNGYQIKYQSDNDEYNSLDDVSEFLTFKKKNKPSKRYYKYKFTCPMCSKSFITDFHLKRHILKHVHKKVDCYICGKHFKSKFFLYEHIKMVHILDKTKYFSCETCGRTYQDENRSRAHENSHLSKDCHLCGKIFVSQRHFDSHMQRHAVKFNLVKTSSQICSFCEKDYSNDNQLSLHVNKVHLQIKPYGCDMCERQFYTETNLKKHKKTHNMKAKETCELCNKTFNTRKSMVIHLRKHTGETPHRCPLCGKAFYSELKAKNHMRNYHGGTLYCKLCKSVFSKKYDLKSHVIMFHNQNALL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657621;
- 90% Identity
- -
- 80% Identity
- -