Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991076.1:11343780-11346338[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.026 3 10.1 0.3 1 23 5 28 5 28 0.88

2 16 2 2.3e+02 4.2 0.0 2 23 57 79 56 79 0.91

3 16 0.015 1.7 10.9 1.0 1 23 101 123 101 123 0.98

4 16 0.0014 0.16 14.1 0.2 1 23 127 149 127 149 0.95

5 16 0.2 23 7.3 0.2 1 23 154 177 154 177 0.87

6 16 0.0039 0.44 12.7 4.9 1 23 183 206 183 206 0.96

7 16 0.065 7.5 8.8 0.3 1 11 213 223 213 227 0.88

8 16 2.8 3.3e+02 3.7 3.9 1 23 354 377 354 377 0.95

9 16 3.9 4.5e+02 3.2 0.4 2 23 402 424 401 424 0.92

10 16 0.13 15 7.9 0.1 1 23 448 470 448 470 0.96

11 16 0.00037 0.042 15.9 0.2 1 23 474 496 474 496 0.98

12 16 0.00065 0.074 15.1 1.3 1 23 501 524 501 524 0.96

13 16 0.014 1.6 11.0 0.3 2 23 531 553 531 553 0.92

14 16 0.03 3.4 9.9 6.3 1 23 560 583 560 583 0.96

15 16 0.0001 0.011 17.7 4.9 2 23 590 611 589 611 0.96

16 16 3.4e-05 0.0039 19.2 0.6 1 23 617 639 617 639 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.026	3	10.1	0.3	1	23	5	28	5	28	0.88
2	16	2	2.3e+02	4.2	0.0	2	23	57	79	56	79	0.91
3	16	0.015	1.7	10.9	1.0	1	23	101	123	101	123	0.98
4	16	0.0014	0.16	14.1	0.2	1	23	127	149	127	149	0.95
5	16	0.2	23	7.3	0.2	1	23	154	177	154	177	0.87
6	16	0.0039	0.44	12.7	4.9	1	23	183	206	183	206	0.96
7	16	0.065	7.5	8.8	0.3	1	11	213	223	213	227	0.88
8	16	2.8	3.3e+02	3.7	3.9	1	23	354	377	354	377	0.95
9	16	3.9	4.5e+02	3.2	0.4	2	23	402	424	401	424	0.92
10	16	0.13	15	7.9	0.1	1	23	448	470	448	470	0.96
11	16	0.00037	0.042	15.9	0.2	1	23	474	496	474	496	0.98
12	16	0.00065	0.074	15.1	1.3	1	23	501	524	501	524	0.96
13	16	0.014	1.6	11.0	0.3	2	23	531	553	531	553	0.92
14	16	0.03	3.4	9.9	6.3	1	23	560	583	560	583	0.96
15	16	0.0001	0.011	17.7	4.9	2	23	590	611	589	611	0.96
16	16	3.4e-05	0.0039	19.2	0.6	1	23	617	639	617	639	0.99

Sequence Information

Coding Sequence: ATGaagaatttatatttatgtttttactgTGATAACCAATTTAACGATCCAGCCTGGCTGAGAACTCATAATGAAAATGAACATAGAGTTAAGACTGCAGCACAAATAAAATCAGCATTGTCAAAACTGAAAAAGTATGAACTTGCTAAAGTAGACGTCACTAACACTGTTTGCGCTATTTGCGATGATGTCTTAGCCGATTTTAATGAGTTGAAGCAACATCtgatagaaaaacataacaaacgcATTGATCCAGAATCGAATGACAGTATACTTCCTTTCAGAGTAACGAAAAACGACTTCAAATGCGCAATTTGTTGCGAAGCGTTTGCCGAATTCAAAAGTTTAAACCAACATATGAATGTGCACTATCAGAATTTTATTTGCGAACAATGCGGAACGGGATTCATCACCCCGGAGCGTCTGAGAACGCACGCCTTTTCCCACGAGACAGGCTCTTTTCCTTGTGACGCTTGTGAGAAAGTCTTCCGTTCGACAAATGCCAAGAACGAACATTACGCCCTCGTTCATATGCGTGTGAAGAGACATCGGTGTCCCCATTGCCCCGAGACATTTAGGAACTACTTCCAAAGAAACAAACATGTGTCGAAAGTCCATGGTCTCAAACTAAAAGAGTTCAAGTGTAATTTGTGTCCTAAAGTTTTCACACTAAGTGgATCCGACTCGCCAATATTACCGGAAATACAGAAGCAGAAAAGGATCGTGCCCTTGTTCCAAGTGGCATACGACCGCAGCTTGTGTAAACCGCTGGGCACGATATCGGACTTCGATAAAATCGACCTAAAACTTAGGTCTCTAGCACAAATATCTCAATACCTTCCGACTACTTCAAGGGGTTTCACTCCGTCCCGTAGTCCTTCTCCTATATCAAATAGAGACCAGACCGCGTCTCCACCCGTGAATCCCGGGATTAACTTACACCCGCCCGTCGAAGTACTCATCCCTCCAAAACACAAAAAGCGACCCGATATTCGACAAAACGCATTAACAGTGTTCGAGAACTCAACAGTGTATCCGTTCATTTATGGGAAcaacaaattcaaatgttttgtttgttctcAACCGTTTTTAGAAACAACTGAATTGAGTCATCACATGCAAGAATGCCACGGGTTCGGAGCATTAAAAAGACTGGTCAATAATCGTCGAGAAAATGTGCTCAAAGTTGACGTTAGTGACATGGTGTGCAAGCTCTGCTCCTTGCGGCCTAAAGATTTAACTGAATTGAAATATCACTTAAAAGAATCGCATCAACAACCCATAGATCCTGAATTGAATGATAATATGATACCGTTTAAGCTAGATGGTCGAAGTGGTTCCTATAAATGTGTGATGTGTGACGAAGAGTTCATTAAAGTGAGAATATTAGTCATACACATGAGCGTACACTTCAACAACTACAGCTGTGAAATCTGTGGTTCCGGTTTCATGACTCTGCGTCTACTAAAAAAACACCTCGAAGTGCACGAAAACGGTAACTTTCCCTGTGACCGCTGCAACAAAGTGTTTACAACACCGCATAAGCGCTCGCTACATATTCGAGGTGTCCATTTGAAACAATATCCGCGCCGATGTCCTATATGTCCAGAAAGATTCAATTCTAACTATAGACGTACAATCCATCTTCAAGACGTACACAACCAGTCCACGCGTGTTCACAAATGCGAGACTTGCGGGCGAGCGTTCAACCTTAAATACCACTTGATATGTCATACTCGCTCTGTACACCTGCAGGAAAGAAATCAACAGTGCGACGTCTGTCATCAACGGTTCTGCAATAAGGAGACGCTGAAACGACACATGGTTATTCACACAGGAGAGAAAAACTATAAGTGCGAAGTGTGTGGCATGGCGTTCTTAAGAAGAAAGAATTTGAAAGACCATCTTAGACTACATGAAAACGTACTTCAAGTATAA
Protein Sequence: MKNLYLCFYCDNQFNDPAWLRTHNENEHRVKTAAQIKSALSKLKKYELAKVDVTNTVCAICDDVLADFNELKQHLIEKHNKRIDPESNDSILPFRVTKNDFKCAICCEAFAEFKSLNQHMNVHYQNFICEQCGTGFITPERLRTHAFSHETGSFPCDACEKVFRSTNAKNEHYALVHMRVKRHRCPHCPETFRNYFQRNKHVSKVHGLKLKEFKCNLCPKVFTLSGSDSPILPEIQKQKRIVPLFQVAYDRSLCKPLGTISDFDKIDLKLRSLAQISQYLPTTSRGFTPSRSPSPISNRDQTASPPVNPGINLHPPVEVLIPPKHKKRPDIRQNALTVFENSTVYPFIYGNNKFKCFVCSQPFLETTELSHHMQECHGFGALKRLVNNRRENVLKVDVSDMVCKLCSLRPKDLTELKYHLKESHQQPIDPELNDNMIPFKLDGRSGSYKCVMCDEEFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHENGNFPCDRCNKVFTTPHKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHENVLQV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00021582;
90% Identity: -
80% Identity: -