Nudd051478.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991078.1:14156276-14194208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.6e-05 0.0064 18.5 0.5 1 23 455 477 455 477 0.99 2 12 7.7 8.8e+02 2.3 4.1 3 23 486 506 485 506 0.94 3 12 0.083 9.6 8.5 0.2 1 23 510 532 510 532 0.96 4 12 0.06 6.9 8.9 5.6 1 23 537 560 537 560 0.93 5 12 0.00049 0.056 15.5 0.1 2 23 566 588 565 588 0.94 6 12 0.013 1.5 11.0 0.1 1 21 596 616 596 620 0.90 7 12 0.015 1.7 10.8 0.1 2 21 624 643 623 646 0.88 8 12 6.9e-05 0.0079 18.2 0.9 1 23 651 674 651 674 0.98 9 12 0.029 3.4 9.9 0.3 1 23 713 735 713 735 0.98 10 12 4.4e-07 5e-05 25.1 0.3 1 23 741 763 741 763 0.99 11 12 8.6e-06 0.00098 21.0 2.9 1 23 769 792 769 792 0.97 12 12 3.5e-05 0.0041 19.1 1.4 3 23 802 823 801 823 0.97
Sequence Information
- Coding Sequence
- ATGGACATAATACACCATCAGCCCTTAAAGCCAGACTTGTTCTGCTGTCGCGCCTGTTTGGCCACCGCCTGTAGACTGCACAACATTCATGAAAATAACCTTGCTGATGCCTTTTCTCGTATCTCGGGGACGCCTgttttaaagGATGAATTTCCGCAGTACCTGTGTACATACTGTTGCACCCTACTGCTTAAATGTGCATCATTCAGGATCACTTGTTTGGAGACACAGCAATGCCTCAACTTGGAGCTACTCAAGGGAGAGctGAATGCTGATTGTATTCTCAGGATAGACCGCCCCTCCCACCGTCTCAACCTTACATTATCTGGGATCGACATCCTTGAATGTGTTCAGGCCCCGCCAACAGACATAAAACATGAACCAAATGACGTAACAGACACAGATGAACCAGCTATAGAAACATTTGTCAAATGTGAAGGAAATATAGACAATGATGATCTTAACTCAACAAGCATAGATGATGTTAACTTAGATTTCCAGCTGAACGCTGATAGTATTCTCAGGATAAACCGCCCCTCCCACCGCCTCAACCAGACTTTGTCTGAGATCAACATCCTTGAATGTGTTCAGGCCCAGCCAACAGACATAAAACATGAACCAAAGTACGTAATAGACACAGCTGAACTAGCTATAGAAACAGTTGTCAAATGTGAAGGAAATATAGACAATGATGATCTTAACTCAACAAGCATAGATGATGTTAACTTAGACAAAACAAGCATGGATGATGTTAACTTAAGTGAACCACACAAAGATGATGTACATATAGAAACAGTTGATGTACCCAGTAACAAACAGAAACATGATTCTAAAAGAGATCATGTTAACAAAAAATGTGAAGATAAAATCAAAGATAAGTTACTAAATAACTATAAAGAAGATAGACTTTTAGTGAACAAGatgaaaactattaaaactTATCAGAGAAAAATTGGATCTTCAACCAAGAAAAAGATGATGGAAATGCAAGCGTACTCTAATAAaattagtattaaaatagacaaaaaaaatgatattagTATAGGTGAAACAAGTATAGATGATGTTGAAACAGATGAAAAACCAGTGAAACCTGTGAAAAAGACAAATGGGATCAAGAGAAAGACCACAGACAAGAATAATATATCTGATAATGCAGATTCAAAACTAGTGGAGCCAGTGACAAGGGGAAGGcgaagaaagaaaagaaagttCAGAAACGCAGCAAATGACTACATGCCGGCTTTTGATTTCACACAGATTGAGAAAGATTATGCGATGAAAATTATTACATTGACAAAGCAAGAGCAACTGGATGAGATCGTGCAGAGAAAGCAGTCGCGCAACTACACAGCCTCATGGTACAAGTGTGAAGACTGCGGGAGGGGCTTCGACGTCGAGACTGCGTACAACAACCACCGGCGGCGACACAGCCCGAGCGAGGGCCCGGAGGCGTGCAGCATCTGTTCGATGCGCTACAAGCGGCCGTGTCTGCGGCACAAACACGAGGACTCTCACAGGCTCAAGTTCATCTGTCAGTTGTGTGGGGAAGTCGTCCGTAGCAGGTTTGCGGCAAAGGTCCATCACGAGGTCCACAATGGTCTGAGGTTCGCTTGCAAGCACTGCGACAAAATGTTCAGTAAGAGTACGACGTGTTTCTCGCATGTGCGGCTGGCGCACCCGGACTTAAACGTCTCATGCGAAATTTGCGGCGAGACTTTCGTCAGCGACAGTGGACTCAGACAGCACAAGACTATGTCGCATATCGAGCTCACGAAACCTCAATTCAAATGCGCAACATGTTCAGCGAACTTCATCAGTTTAGACGCGTTgaacagacacacagacagcgGCGAGCACGCGGGCAGCCCGTGCGAGCAGTGCGGCGAGAGCTGTGCGAGCGAGGAGGCGCTACAGGCGCATGTGGGAGAGAGACATCCGATCGACTGTTATCAGTGTAATGAGtGTAGCGGGACGTTTACGAGCGCCGCTGCTTTCGAGCGGCACTACAGACGGAAGCACCTCCTCGAGCGCTCCTCGGCGGCGCGCGTCGCCCGCAAGCCCGCGCCCGCGaggcccgccgccgccgccgccgccgccgccgccgccgccgccgccggcccgcgccgccgccggttCATGTGCGAGCAGTGCGGATACATAGCGCAGAGCCTGGCGACGCTCCGGTACCATCAGAACAGGCATCTGGCTGTGAAACCGTACACTTGCCCGCACTGCCCTAAGACCTACCCAACCAAGATCGCATTGCAGTGGCACATACGGATACACACGGGGGAAAGGCCTTACAAATGCTCCGATTGCCCGATGACCTTTAGGCACCCCGGTAACATGAAGCGGCATCACAACGTGGTGCACCGAAAGATACATGCCGACGCGGCGCCATGCCACATATGCTCGCGAGTGTTCACCACGAAGTCCAGCATGCAACTGCACGTCAACACGGTGCACAACGGCCAGCCCGGGCCGGTCAGGAACCGCCGCAAGCGCAAGGTTAAGGTTGCcaactaa
- Protein Sequence
- MDIIHHQPLKPDLFCCRACLATACRLHNIHENNLADAFSRISGTPVLKDEFPQYLCTYCCTLLLKCASFRITCLETQQCLNLELLKGELNADCILRIDRPSHRLNLTLSGIDILECVQAPPTDIKHEPNDVTDTDEPAIETFVKCEGNIDNDDLNSTSIDDVNLDFQLNADSILRINRPSHRLNQTLSEINILECVQAQPTDIKHEPKYVIDTAELAIETVVKCEGNIDNDDLNSTSIDDVNLDKTSMDDVNLSEPHKDDVHIETVDVPSNKQKHDSKRDHVNKKCEDKIKDKLLNNYKEDRLLVNKMKTIKTYQRKIGSSTKKKMMEMQAYSNKISIKIDKKNDISIGETSIDDVETDEKPVKPVKKTNGIKRKTTDKNNISDNADSKLVEPVTRGRRRKKRKFRNAANDYMPAFDFTQIEKDYAMKIITLTKQEQLDEIVQRKQSRNYTASWYKCEDCGRGFDVETAYNNHRRRHSPSEGPEACSICSMRYKRPCLRHKHEDSHRLKFICQLCGEVVRSRFAAKVHHEVHNGLRFACKHCDKMFSKSTTCFSHVRLAHPDLNVSCEICGETFVSDSGLRQHKTMSHIELTKPQFKCATCSANFISLDALNRHTDSGEHAGSPCEQCGESCASEEALQAHVGERHPIDCYQCNECSGTFTSAAAFERHYRRKHLLERSSAARVARKPAPARPAAAAAAAAAAAAAGPRRRRFMCEQCGYIAQSLATLRYHQNRHLAVKPYTCPHCPKTYPTKIALQWHIRIHTGERPYKCSDCPMTFRHPGNMKRHHNVVHRKIHADAAPCHICSRVFTTKSSMQLHVNTVHNGQPGPVRNRRKRKVKVAN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -